On 18 April 2019 at 15:51, Christofer Bogaso wrote: | Hi, | | I was trying install rJava package but failed to install with below error:
You misspelled sudo apt-get install r-cran-rjava Dirk | | *trying URL 'https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz | <https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz>'* | *Content type 'application/x-gzip' length 675188 bytes (659 KB)* | *==================================================* | *downloaded 659 KB* | | ** installing *source* package ‘rJava’ ...* | *** package ‘rJava’ successfully unpacked and MD5 sums checked* | *checking for gcc... gcc -std=gnu99* | *checking whether the C compiler works... yes* | *checking for C compiler default output file name... a.out* | *checking for suffix of executables...* | *checking whether we are cross compiling... no* | *checking for suffix of object files... o* | *checking whether we are using the GNU C compiler... yes* | *checking whether gcc -std=gnu99 accepts -g... yes* | *checking for gcc -std=gnu99 option to accept ISO C89... none needed* | *checking how to run the C preprocessor... gcc -std=gnu99 -E* | *checking for grep that handles long lines and -e... /bin/grep* | *checking for egrep... /bin/grep -E* | *checking for ANSI C header files... yes* | *checking for sys/wait.h that is POSIX.1 compatible... yes* | *checking for sys/types.h... yes* | *checking for sys/stat.h... yes* | *checking for stdlib.h... yes* | *checking for string.h... yes* | *checking for memory.h... yes* | *checking for strings.h... yes* | *checking for inttypes.h... yes* | *checking for stdint.h... yes* | *checking for unistd.h... yes* | *checking for string.h... (cached) yes* | *checking sys/time.h usability... yes* | *checking sys/time.h presence... yes* | *checking for sys/time.h... yes* | *checking for unistd.h... (cached) yes* | *checking for an ANSI C-conforming const... yes* | *checking whether time.h and sys/time.h may both be included... yes* | *configure: checking whether gcc -std=gnu99 supports static inline...* | *yes* | *checking whether setjmp.h is POSIX.1 compatible... yes* | *checking whether sigsetjmp is declared... yes* | *checking whether siglongjmp is declared... yes* | *checking Java support in R... present:* | *interpreter : '/usr/lib/jvm/java-12-oracle/bin/java'* | *archiver : '/usr/lib/jvm/java-12-oracle/bin/jar'* | *compiler : '/usr/lib/jvm/java-12-oracle/bin/javac'* | *header prep.: '/usr/bin/javah'* | *cpp flags : '-I/usr/lib/jvm/java-12-oracle/include | -I/usr/lib/jvm/java-12-oracle/include/linux'* | *java libs : '-L/usr/lib/jvm/java-12-oracle/lib/server -ljvm -ldl'* | *checking whether Java run-time works... ./configure: line 3766: | /usr/lib/jvm/java-12-oracle/bin/java: No such file or directory* | *no* | *configure: error: Java interpreter '/usr/lib/jvm/java-12-oracle/bin/java' | does not work* | *ERROR: configuration failed for package ‘rJava’* | ** removing ‘/home/asaha/R/x86_64-pc-linux-gnu-library/3.4/rJava’* | | *The downloaded source packages are in* | * ‘/tmp/RtmpAHaE0V/downloaded_packages’* | *Warning message:* | *In install.packages("rJava") :* | * installation of package ‘rJava’ had non-zero exit status* | | below is my *javareconf* | | *sudo R CMD javareconf* | *Java interpreter : /usr/lib/jvm/java-11-oracle/bin/java* | *Java version : 11.0.2* | *Java home path : /usr/lib/jvm/java-11-oracle* | *Java compiler : /usr/lib/jvm/java-11-oracle/bin/javac* | *Java headers gen.: /usr/bin/javah* | *Java archive tool: /usr/lib/jvm/java-11-oracle/bin/jar* | | *trying to compile and link a JNI program* | *detected JNI cpp flags : -I$(JAVA_HOME)/include | -I$(JAVA_HOME)/include/linux* | *detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm* | *gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG | -I/usr/lib/jvm/java-11-oracle/include | -I/usr/lib/jvm/java-11-oracle/include/linux -fpic -g -O2 | -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time | -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o* | *g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o | conftest.so conftest.o -L/usr/lib/jvm/java-11-oracle/lib/server -ljvm | -L/usr/lib/R/lib -lR* | | | *JAVA_HOME : /usr/lib/jvm/java-11-oracle* | *Java library path: $(JAVA_HOME)/lib/server* | *JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux* | *JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm* | *Updating Java configuration in /usr/lib/R* | *Done.* | | *I dont understand despite having version Java-11, at the time of | installation R is showing interpreter as 12.* | | Any idea to resolve this issue will be highly helpful. | | [[alternative HTML version deleted]] | | _______________________________________________ | R-SIG-Debian mailing list | R-SIG-Debian@r-project.org | https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian