Hi Fernando, your "poolaccum" class is a list. You can access each element using either [[ or $ (object$listName). In your case, that would be estimator$jack1. If you want the mean by rows, you can do
apply(X = estimator$jack1, MARGIN = 1, FUN = mean) or if you want standard deviation apply(X = estimator$jack1, MARGIN = 1, FUN = sd) Someone more knowledgeable will have to weigh in on the ACE/ICE estimators. Cheers, Roman On Fri, Mar 25, 2011 at 5:34 PM, Fernando Rodrigues da Silva < bigos...@yahoo.com.br> wrote: > Hello everyone, > > I get two questions about richness estimators .. > > When I use the command below poolaccum from library (vegan) I have the > following > result > > estimator <- poolaccum (est, permutations = 100, minsize = 1) > summary (estimator, display = "jack1") > > N Jackknife 1 2.5% 97.5% Std.Dev > 1 5.210000 2.0000000 8.525000 1.79952294 > 2 9.600000 4.2125000 14.500000 2.65622958 > 3 12.116667 6.6666667 17.508333 2.83689616 > 4 13.607500 8.5000000 18.250000 2.86595635 > 5 14.100000 9.6000000 18.600000 2.62628516 > 6 14.751667 9.8333333 18.166667 2.34706099 > 7 15.408571 10.7142857 18.285714 2.11297296 > 8 15.540000 11.7500000 19.250000 2.10607886 > 9 15.766667 12.3111111 18.444444 1.80268052 > 10 15.974000 12.9000000 18.500000 1.40105444 > 11 16.198182 13.3409091 19.022727 1.36031920 > 12 16.089167 14.8333333 17.666667 0.93069726 > 13 16.012308 14.8461538 17.692308 0.72956962 > 14 15.857143 15.8571429 15.857143 0.00000000 > > 1) I would like to know which command I have to use to get the mean and > standard deviation ... What command I use to use these data as vectors > separately .. > > 2) For the ACE and ICE estimators they consider the abundance of 10 > individuals > or incidence in 10 samples as being rare, I wonder if anyone > know how to change this value. > > Thank you for your attention. > > Best regards, > > > FERNANDO RODRIGUES DA SILVA > ======================================================= > > Doutor em Biologia Animal > > Lab. de Ecologia Animal, UNESP - São José do Rio Preto - Cep 15054-000 > > Celular:(17) 8126-4085 & (17) 9774-3163 > > MSN: bigos...@hotmail.com Skype: presidentedalaponia > > Lattes: > http://buscatextual.cnpq.br/buscatextual/visualizacv.jsp?id=K4777878T8 > > ------------------------------------------------------------------------------------------------------------------------ > > > > [[alternative HTML version deleted]] > > > _______________________________________________ > R-sig-ecology mailing list > R-sig-ecology@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-ecology > > -- In God we trust, all others bring data. [[alternative HTML version deleted]]
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