Hi Bjorn, You could check out Local Similarity Analysis (http://meta.usc.edu/softs/lsa/) or alternatively, network assortativity e.g. in {igraph} http://www.inside-r.org/packages/cran/igraph/docs/assortativity
Hope it helps, Cheers, Johannes On May 11, 2015, at 4:40 PM, Bjorn Tytgat wrote: > Hi all, > > I've made a network of OTUs using phyloseq. Now, I'd like to correlate > environmental variables to the clusters I observed. Anybody here who has an > idea on how to do this exactly? Perhaps there are multiple ways, or if it is > possible using another package (network, sna, ...), please let me know. > > > Thanks in advance. > > Kind regards, > Bjorn > > _______________________________________________ > R-sig-ecology mailing list > R-sig-ecology@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-ecology [[alternative HTML version deleted]] _______________________________________________ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology
