Dear Ákos, Thank you so much for the suggestions! I ended up using the function described in https://rcompanion.org/r_script_deprecated/pairwiseRobustTest.r as suggested by a response to my post on https://stackoverflow.com/questions/78800048/error-using-mcp2atm-function-for-robust-pairwise-comparisons-undefined-columns. It ran perfectly, and the analysis makes all sense!
Best, Renato *Renato Filogonio* http://lattes.cnpq.br/0339937732653268 On Sun, Jul 28, 2024 at 12:30 AM Bede-Fazekas Ákos <bfalevl...@gmail.com> wrote: > Dear Renato, > > It's good to hear that the original error disappeared. Regarding the new > error, I have no idea, maybe some members of the mailing list are > familiar with this packages/function and can help you. > In the meantime, you might want to try calling traceback() right after > the error. It may help you figure out the origin of this error. Also you > can check the source code of smmcrit() > (https://rdrr.io/cran/WRS2/src/R/smmcrit.R) and mcp2atm() > (https://rdrr.io/rforge/WRS2/src/R/mcp2atm.R) to understand the > not-too-informative error message. > > Have a nice weekend, > Ákos > ______________ > Ákos Bede-Fazekas > Centre for Ecological Research, Hungary > > > 2024. 07. 28. 3:49 keltezéssel, Renato Filogonio írta: > > Dear Ákos, > > Thank you so much for your response. I tried your suggestion and it did > > solve that error message from before, but another message appears now: > > > > Error in smmcrit(df, ncol(con)) : C must be less than or equal to 28 > > > > I tried to look for the correction of this error, but I could not find it > > anywhere. > > The t2way() function works fine as before, but the mcp2atm() function is > > still problematic. I put below the dataset used for this analysis. > > > > i t c fr0 Warm 1 050 Warm 1 2100 Warm 1 6150 > > Warm 1 16200 Warm 1 20250 Warm 1 24300 Warm 1 > > 26350 Warm 1 28400 Warm 1 32450 Warm 1 34500 Warm 1 > > 36550 Warm 1 38600 Warm 1 40650 Warm 1 42700 Warm 1 > > 44750 Warm 1 46800 Warm 1 46850 Warm 1 48900 Warm > > 1 48950 Warm 1 461000 Warm 1 421050 Warm 1 > > 321100 Warm 1 421150 Warm 1 381200 Warm 1 > > 281250 Warm 1 281300 Warm 1 280 Warm 2 050 > > Warm 2 0100 Warm 2 0150 Warm 2 0200 Warm 2 0250 > > Warm 2 2300 Warm 2 6350 Warm 2 12400 Warm 2 20450 > > Warm 2 30500 Warm 2 38550 Warm 2 46600 Warm 2 > > 54650 Warm 2 60700 Warm 2 64750 Warm 2 68800 Warm 2 > > 72850 Warm 2 76900 Warm 2 78950 Warm 2 801000 Warm > > 2 821050 Warm 2 841100 Warm 2 881150 Warm 2 > > 901200 Warm 2 941250 Warm 2 941300 Warm 2 960 > > Warm 3 050 Warm 3 6100 Warm 3 16150 Warm 3 > > 22200 Warm 3 28250 Warm 3 32300 Warm 3 38350 Warm 3 > > 42400 Warm 3 46450 Warm 3 50500 Warm 3 54550 Warm 3 > > 58600 Warm 3 62650 Warm 3 66700 Warm 3 68750 Warm > > 3 72800 Warm 3 76850 Warm 3 78900 Warm 3 82950 Warm > > 3 841000 Warm 3 861050 Warm 3 881100 Warm 3 > > 921150 Warm 3 941200 Warm 3 961250 Warm 3 > > 981300 Warm 3 1020 Warm 4 650 Warm 4 10100 Warm > > 4 12150 Warm 4 14200 Warm 4 16250 Warm 4 20300 Warm > > 4 22350 Warm 4 26400 Warm 4 26450 Warm 4 30500 Warm > > 4 32550 Warm 4 34600 Warm 4 36650 Warm 4 38700 > > Warm 4 40750 Warm 4 42800 Warm 4 46850 Warm 4 > > 48900 Warm 4 50950 Warm 4 501000 Warm 4 521050 > > Warm 4 561100 Warm 4 581150 Warm 4 581200 Warm > > 4 621250 Warm 4 621300 Warm 4 660 Warm 5 > > 050 Warm 5 0100 Warm 5 8150 Warm 5 16200 Warm 5 > > 20250 Warm 5 26300 Warm 5 30350 Warm 5 34400 Warm 5 > > 38450 Warm 5 42500 Warm 5 46550 Warm 5 52600 Warm 5 > > 54650 Warm 5 58700 Warm 5 60750 Warm 5 64800 Warm > > 5 68850 Warm 5 70900 Warm 5 72950 Warm 5 761000 > > Warm 5 761050 Warm 5 781100 Warm 5 821150 Warm > > 5 841200 Warm 5 821250 Warm 5 741300 Warm 5 > > 720 Warm 6 050 Warm 6 2100 Warm 6 10150 Warm 6 > > 16200 Warm 6 22250 Warm 6 26300 Warm 6 34350 Warm 6 > > 34400 Warm 6 38450 Warm 6 42500 Warm 6 44550 Warm > > 6 48600 Warm 6 52650 Warm 6 54700 Warm 6 58750 Warm > > 6 60800 Warm 6 62850 Warm 6 66900 Warm 6 68950 Warm > > 6 701000 Warm 6 721050 Warm 6 761100 Warm 6 > > 781150 Warm 6 801200 Warm 6 821250 Warm 6 > > 841300 Warm 6 840 Warm 7 050 Warm 7 2100 Warm > > 7 10150 Warm 7 16200 Warm 7 22250 Warm 7 30300 Warm > > 7 36350 Warm 7 40400 Warm 7 46450 Warm 7 54500 Warm > > 7 58550 Warm 7 64600 Warm 7 68650 Warm 7 74700 Warm > > 7 80750 Warm 7 84800 Warm 7 90850 Warm 7 94900 > > Warm 7 100950 Warm 7 1041000 Warm 7 1081050 Warm > > 7 1121100 Warm 7 1161150 Warm 7 1201200 Warm > > 7 1221250 Warm 7 1261300 Warm 7 1280 Warm 8 > > 050 Warm 8 0100 Warm 8 0150 Warm 8 0200 Warm 8 > > 0250 Warm 8 0300 Warm 8 0350 Warm 8 0400 Warm 8 > > 0450 Warm 8 0500 Warm 8 0550 Warm 8 0600 Warm 8 > > 0650 Warm 8 0700 Warm 8 0750 Warm 8 0800 Warm 8 > > 0850 Warm 8 2900 Warm 8 6950 Warm 8 101000 Warm 8 > > 141050 Warm 8 201100 Warm 8 241150 Warm 8 > > 281200 Warm 8 321250 Warm 8 361300 Warm 8 420 > > Warm 9 050 Warm 9 0100 Warm 9 0150 Warm 9 4200 > > Warm 9 10250 Warm 9 14300 Warm 9 18350 Warm 9 > > 22400 Warm 9 26450 Warm 9 30500 Warm 9 32550 Warm 9 > > 34600 Warm 9 38650 Warm 9 40700 Warm 9 44750 Warm 9 > > 46800 Warm 9 48850 Warm 9 50900 Warm 9 54950 Warm > > 9 561000 Warm 9 581050 Warm 9 601100 Warm 9 > > 621150 Warm 9 641200 Warm 9 641250 Warm 9 > > 661300 Warm 9 680 Warm 10 050 Warm 10 0100 Warm > > 10 0150 Warm 10 0200 Warm 10 0250 Warm 10 0300 Warm 10 > > 4350 Warm 10 12400 Warm 10 20450 Warm 10 28500 Warm 10 > > 34550 Warm 10 38600 Warm 10 44650 Warm 10 48700 Warm > > 10 52750 Warm 10 56800 Warm 10 60850 Warm 10 64900 Warm > > 10 64950 Warm 10 681000 Warm 10 701050 Warm 10 > > 741100 Warm 10 761150 Warm 10 761200 Warm 10 > > 781250 Warm 10 801300 Warm 10 800 Warm 11 050 > > Warm 11 0100 Warm 11 0150 Warm 11 6200 Warm 11 16250 > > Warm 11 26300 Warm 11 34350 Warm 11 42400 Warm 11 > > 48450 Warm 11 56500 Warm 11 62550 Warm 11 68600 Warm 11 > > 74650 Warm 11 80700 Warm 11 86750 Warm 11 92800 Warm > > 11 96850 Warm 11 102900 Warm 11 108950 Warm 11 1121000 > > Warm 11 1161050 Warm 11 1221100 Warm 11 1241150 > > Warm 11 1301200 Warm 11 1341250 Warm 11 1381300 > > Warm 11 1420 Warm 12 050 Warm 12 0100 Warm 12 0150 > > Warm 12 0200 Warm 12 0250 Warm 12 6300 Warm 12 12350 > > Warm 12 16400 Warm 12 20450 Warm 12 24500 Warm 12 > > 26550 Warm 12 30600 Warm 12 32650 Warm 12 36700 Warm 12 > > 38750 Warm 12 42800 Warm 12 44850 Warm 12 46900 Warm > > 12 50950 Warm 12 521000 Warm 12 541050 Warm 12 > > 561100 Warm 12 581150 Warm 12 621200 Warm 12 > > 641250 Warm 12 661300 Warm 12 700 Warm 13 050 > > Warm 13 14100 Warm 13 26150 Warm 13 38200 Warm 13 > > 46250 Warm 13 54300 Warm 13 62350 Warm 13 68400 Warm 13 > > 74450 Warm 13 76500 Warm 13 82550 Warm 13 82600 Warm > > 13 88650 Warm 13 92700 Warm 13 94750 Warm 13 92800 Warm > > 13 92850 Warm 13 100900 Warm 13 108950 Warm 13 1041000 > > Warm 13 1021050 Warm 13 961100 Warm 13 561150 > > Warm 13 401200 Warm 13 381250 Warm 13 341300 Warm > > 13 300 Warm 14 050 Warm 14 8100 Warm 14 14150 Warm > > 14 18200 Warm 14 20250 Warm 14 24300 Warm 14 26350 Warm > > 14 30400 Warm 14 32450 Warm 14 34500 Warm 14 38550 > > Warm 14 40600 Warm 14 42650 Warm 14 44700 Warm 14 > > 46750 Warm 14 48800 Warm 14 50850 Warm 14 52900 Warm 14 > > 54950 Warm 14 541000 Warm 14 561050 Warm 14 581100 > > Warm 14 601150 Warm 14 601200 Warm 14 621250 > > Warm 14 641300 Warm 14 660 Warm 15 1050 Warm 15 > > 42100 Warm 15 112150 Warm 15 178200 Warm 15 204250 Warm > > 15 220300 Warm 15 234350 Warm 15 244400 Warm 15 252450 > > Warm 15 260500 Warm 15 264550 Warm 15 268600 Warm 15 > > 268650 Warm 15 268700 Warm 15 266750 Warm 15 256800 Warm > > 15 188850 Warm 15 136900 Warm 15 100950 Warm 15 801000 > > Warm 15 661050 Warm 15 641100 Warm 15 421150 > > Warm 15 381200 Warm 15 321250 Warm 15 281300 Warm > > 15 240 Warm 16 050 Warm 16 0100 Warm 16 0150 Warm > > 16 10200 Warm 16 18250 Warm 16 24300 Warm 16 32350 Warm > > 16 38400 Warm 16 44450 Warm 16 48500 Warm 16 54550 Warm > > 16 58600 Warm 16 62650 Warm 16 66700 Warm 16 70750 > > Warm 16 74800 Warm 16 78850 Warm 16 80900 Warm 16 > > 84950 Warm 16 861000 Warm 16 901050 Warm 16 921100 > > Warm 16 961150 Warm 16 981200 Warm 16 1021250 > > Warm 16 1021300 Warm 16 1040 Warm 17 050 Warm 17 > > 0100 Warm 17 0150 Warm 17 0200 Warm 17 0250 Warm 17 > > 0300 Warm 17 4350 Warm 17 10400 Warm 17 14450 Warm 17 > > 20500 Warm 17 24550 Warm 17 28600 Warm 17 32650 Warm 17 > > 36700 Warm 17 40750 Warm 17 44800 Warm 17 46850 Warm > > 17 50900 Warm 17 54950 Warm 17 561000 Warm 17 601050 > > Warm 17 621100 Warm 17 641150 Warm 17 681200 > > Warm 17 701250 Warm 17 741300 Warm 17 760 Warm > > 18 050 Warm 18 0100 Warm 18 0150 Warm 18 0200 Warm 18 > > 0250 Warm 18 0300 Warm 18 0350 Warm 18 0400 Warm 18 > > 0450 Warm 18 0500 Warm 18 0550 Warm 18 0600 Warm 18 > > 0650 Warm 18 0700 Warm 18 4750 Warm 18 10800 Warm 18 > > 14850 Warm 18 18900 Warm 18 22950 Warm 18 241000 Warm > > 18 281050 Warm 18 301100 Warm 18 321150 Warm 18 > > 341200 Warm 18 361250 Warm 18 381300 Warm 18 420 > > Warm 19 050 Warm 19 14100 Warm 19 26150 Warm 19 > > 38200 Warm 19 46250 Warm 19 54300 Warm 19 62350 Warm 19 > > 68400 Warm 19 74450 Warm 19 76500 Warm 19 82550 Warm > > 19 82600 Warm 19 88650 Warm 19 92700 Warm 19 94750 Warm > > 19 92800 Warm 19 92850 Warm 19 100900 Warm 19 108950 > > Warm 19 1041000 Warm 19 1021050 Warm 19 961100 > > Warm 19 561150 Warm 19 401200 Warm 19 381250 Warm > > 19 341300 Warm 19 300 Warm 20 1250 Warm 20 22100 > > Warm 20 28150 Warm 20 34200 Warm 20 42250 Warm 20 > > 48300 Warm 20 54350 Warm 20 60400 Warm 20 66450 Warm 20 > > 70500 Warm 20 74550 Warm 20 78600 Warm 20 82650 Warm > > 20 88700 Warm 20 92750 Warm 20 96800 Warm 20 98850 Warm > > 20 102900 Warm 20 104950 Warm 20 1061000 Warm 20 > > 1101050 Warm 20 1121100 Warm 20 1141150 Warm 20 > > 1161200 Warm 20 1181250 Warm 20 1201300 Warm 20 > > 1200 Warm 21 050 Warm 21 0100 Warm 21 14150 Warm 21 > > 26200 Warm 21 32250 Warm 21 38300 Warm 21 44350 Warm 21 > > 48400 Warm 21 52450 Warm 21 54500 Warm 21 58550 Warm > > 21 60600 Warm 21 62650 Warm 21 66700 Warm 21 68750 Warm > > 21 70800 Warm 21 72850 Warm 21 74900 Warm 21 76950 Warm > > 21 761000 Warm 21 781050 Warm 21 801100 Warm 21 > > 801150 Warm 21 801200 Warm 21 821250 Warm 21 > > 821300 Warm 21 820 Warm 22 050 Warm 22 2100 Warm > > 22 12150 Warm 22 16200 Warm 22 22250 Warm 22 26300 Warm > > 22 30350 Warm 22 32400 Warm 22 36450 Warm 22 38500 Warm > > 22 40550 Warm 22 44600 Warm 22 46650 Warm 22 48700 Warm > > 22 50750 Warm 22 50800 Warm 22 52850 Warm 22 54900 > > Warm 22 56950 Warm 22 581000 Warm 22 581050 Warm > > 22 601100 Warm 22 601150 Warm 22 621200 Warm 22 > > 641250 Warm 22 641300 Warm 22 660 Warm 23 050 > > Warm 23 0100 Warm 23 0150 Warm 23 6200 Warm 23 18250 > > Warm 23 26300 Warm 23 36350 Warm 23 44400 Warm 23 > > 48450 Warm 23 58500 Warm 23 64550 Warm 23 72600 Warm 23 > > 76650 Warm 23 82700 Warm 23 88750 Warm 23 92800 Warm > > 23 96850 Warm 23 102900 Warm 23 108950 Warm 23 1141000 > > Warm 23 1181050 Warm 23 1241100 Warm 23 1281150 > > Warm 23 1321200 Warm 23 1361250 Warm 23 1401300 > > Warm 23 1460 Warm 24 050 Warm 24 0100 Warm 24 0150 > > Warm 24 0200 Warm 24 0250 Warm 24 0300 Warm 24 10350 > > Warm 24 16400 Warm 24 22450 Warm 24 28500 Warm 24 > > 32550 Warm 24 36600 Warm 24 40650 Warm 24 44700 Warm 24 > > 48750 Warm 24 50800 Warm 24 54850 Warm 24 56900 Warm > > 24 58950 Warm 24 621000 Warm 24 641050 Warm 24 > > 661100 Warm 24 681150 Warm 24 701200 Warm 24 > > 721250 Warm 24 741300 Warm 24 760 Warm 25 050 > > Warm 25 6100 Warm 25 10150 Warm 25 14200 Warm 25 18250 > > Warm 25 20300 Warm 25 24350 Warm 25 26400 Warm 25 > > 28450 Warm 25 30500 Warm 25 34550 Warm 25 36600 Warm 25 > > 36650 Warm 25 40700 Warm 25 42750 Warm 25 42800 Warm > > 25 46850 Warm 25 46900 Warm 25 48950 Warm 25 501000 > > Warm 25 501050 Warm 25 521100 Warm 25 541150 Warm > > 25 561200 Warm 25 561250 Warm 25 581300 Warm > > 25 600 Warm 26 1050 Warm 26 18100 Warm 26 28150 Warm > > 26 34200 Warm 26 44250 Warm 26 52300 Warm 26 60350 Warm > > 26 68400 Warm 26 76450 Warm 26 82500 Warm 26 90550 Warm > > 26 98600 Warm 26 102650 Warm 26 108700 Warm 26 112750 > > Warm 26 116800 Warm 26 120850 Warm 26 122900 Warm 26 > > 126950 Warm 26 1261000 Warm 26 1301050 Warm 26 > > 1321100 Warm 26 1341150 Warm 26 1361200 Warm 26 > > 1381250 Warm 26 1381300 Warm 26 1400 Warm 27 050 > > Warm 27 0100 Warm 27 4150 Warm 27 14200 Warm 27 24250 > > Warm 27 32300 Warm 27 38350 Warm 27 46400 Warm 27 > > 48450 Warm 27 54500 Warm 27 62550 Warm 27 66600 Warm 27 > > 72650 Warm 27 78700 Warm 27 82750 Warm 27 86800 Warm > > 27 92850 Warm 27 96900 Warm 27 100950 Warm 27 1061000 > > Warm 27 1081050 Warm 27 1121100 Warm 27 1161150 > > Warm 27 1201200 Warm 27 1241250 Warm 27 1281300 > > Warm 27 1320 Warm 28 1650 Warm 28 28100 Warm 28 > > 42150 Warm 28 56200 Warm 28 70250 Warm 28 82300 Warm 28 > > 94350 Warm 28 106400 Warm 28 114450 Warm 28 126500 Warm > > 28 130550 Warm 28 138600 Warm 28 144650 Warm 28 150700 > > Warm 28 154750 Warm 28 156800 Warm 28 158850 Warm 28 > > 164900 Warm 28 162950 Warm 28 1701000 Warm 28 1681050 > > Warm 28 1701100 Warm 28 1721150 Warm 28 1721200 > > Warm 28 1721250 Warm 28 1721300 Warm 28 1700 Warm > > 29 1050 Warm 29 16100 Warm 29 26150 Warm 29 30200 Warm > > 29 38250 Warm 29 46300 Warm 29 50350 Warm 29 58400 > > Warm 29 64450 Warm 29 70500 Warm 29 76550 Warm 29 > > 82600 Warm 29 88650 Warm 29 92700 Warm 29 98750 Warm 29 > > 102800 Warm 29 106850 Warm 29 110900 Warm 29 116950 Warm > > 29 1201000 Warm 29 1221050 Warm 29 1261100 Warm > > 29 1281150 Warm 29 1281200 Warm 29 1321250 Warm > > 29 1321300 Warm 29 1320 Warm 30 050 Warm 30 6100 > > Warm 30 12150 Warm 30 16200 Warm 30 20250 Warm 30 > > 22300 Warm 30 26350 Warm 30 28400 Warm 30 32450 Warm 30 > > 34500 Warm 30 36550 Warm 30 38600 Warm 30 42650 Warm > > 30 44700 Warm 30 46750 Warm 30 48800 Warm 30 50850 Warm > > 30 52900 Warm 30 56950 Warm 30 581000 Warm 30 601050 > > Warm 30 621100 Warm 30 641150 Warm 30 661200 > > Warm 30 681250 Warm 30 721300 Warm 30 740 Warm > > 31 050 Warm 31 0100 Warm 31 0150 Warm 31 0200 Warm 31 > > 0250 Warm 31 10300 Warm 31 22350 Warm 31 30400 Warm 31 > > 38450 Warm 31 46500 Warm 31 52550 Warm 31 60600 Warm > > 31 64650 Warm 31 72700 Warm 31 76750 Warm 31 82800 Warm > > 31 86850 Warm 31 92900 Warm 31 96950 Warm 31 1001000 > > Warm 31 1061050 Warm 31 1101100 Warm 31 1141150 > > Warm 31 1161200 Warm 31 1221250 Warm 31 1241300 > > Warm 31 1260 Warm 32 850 Warm 32 16100 Warm 32 > > 24150 Warm 32 32200 Warm 32 38250 Warm 32 46300 Warm 32 > > 52350 Warm 32 58400 Warm 32 62450 Warm 32 68500 Warm > > 32 72550 Warm 32 76600 Warm 32 80650 Warm 32 84700 Warm > > 32 88750 Warm 32 90800 Warm 32 94850 Warm 32 94900 Warm > > 32 96950 Warm 32 981000 Warm 32 1001050 Warm 32 > > 1021100 Warm 32 1001150 Warm 32 1001200 Warm 32 > > 961250 Warm 32 761300 Warm 32 620 Warm 33 050 > > Warm 33 0100 Warm 33 4150 Warm 33 14200 Warm 33 18250 > > Warm 33 24300 Warm 33 30350 Warm 33 36400 Warm 33 > > 40450 Warm 33 44500 Warm 33 50550 Warm 33 54600 Warm 33 > > 58650 Warm 33 60700 Warm 33 66750 Warm 33 70800 Warm > > 33 74850 Warm 33 78900 Warm 33 80950 Warm 33 841000 > > Warm 33 881050 Warm 33 921100 Warm 33 961150 Warm > > 33 981200 Warm 33 1021250 Warm 33 1041300 Warm > > 33 1080 Cold 34 050 Cold 34 0100 Cold 34 0150 Cold > > 34 0200 Cold 34 0250 Cold 34 0300 Cold 34 6350 Cold 34 > > 10400 Cold 34 12450 Cold 34 16500 Cold 34 18550 Cold > > 34 20600 Cold 34 22650 Cold 34 24700 Cold 34 26750 Cold > > 34 28800 Cold 34 30850 Cold 34 32900 Cold 34 34950 Cold > > 34 361000 Cold 34 381050 Cold 34 381100 Cold 34 > > 401150 Cold 34 421200 Cold 34 441250 Cold 34 > > 461300 Cold 34 460 Cold 35 050 Cold 35 0100 Cold > > 35 4150 Cold 35 10200 Cold 35 16250 Cold 35 20300 Cold > > 35 24350 Cold 35 28400 Cold 35 32450 Cold 35 34500 Cold > > 35 38550 Cold 35 42600 Cold 35 44650 Cold 35 48700 Cold > > 35 50750 Cold 35 54800 Cold 35 56850 Cold 35 58900 Cold > > 35 60950 Cold 35 621000 Cold 35 661050 Cold 35 > > 681100 Cold 35 681150 Cold 35 721200 Cold 35 > > 721250 Cold 35 741300 Cold 35 760 Cold 36 050 > > Cold 36 0100 Cold 36 6150 Cold 36 8200 Cold 36 8250 > > Cold 36 8300 Cold 36 10350 Cold 36 10400 Cold 36 10450 > > Cold 36 12500 Cold 36 12550 Cold 36 12600 Cold 36 > > 14650 Cold 36 14700 Cold 36 14750 Cold 36 14800 Cold 36 > > 16850 Cold 36 16900 Cold 36 16950 Cold 36 161000 Cold > > 36 161050 Cold 36 161100 Cold 36 161150 Cold 36 > > 161200 Cold 36 161250 Cold 36 141300 Cold 36 160 > > Cold 37 050 Cold 37 0100 Cold 37 0150 Cold 37 4200 > > Cold 37 16250 Cold 37 20300 Cold 37 24350 Cold 37 > > 26400 Cold 37 30450 Cold 37 36500 Cold 37 38550 Cold 37 > > 42600 Cold 37 44650 Cold 37 46700 Cold 37 50750 Cold > > 37 50800 Cold 37 52850 Cold 37 54900 Cold 37 42950 Cold > > 37 401000 Cold 37 361050 Cold 37 381100 Cold 37 > > 281150 Cold 37 301200 Cold 37 381250 Cold 37 > > 321300 Cold 37 280 Cold 38 050 Cold 38 0100 Cold > > 38 0150 Cold 38 0200 Cold 38 0250 Cold 38 0300 Cold 38 > > 0350 Cold 38 0400 Cold 38 0450 Cold 38 0500 Cold 38 > > 2550 Cold 38 10600 Cold 38 16650 Cold 38 20700 Cold 38 > > 24750 Cold 38 26800 Cold 38 28850 Cold 38 32900 Cold 38 > > 34950 Cold 38 361000 Cold 38 401050 Cold 38 421100 > > Cold 38 441150 Cold 38 461200 Cold 38 481250 > > Cold 38 501300 Cold 38 540 Cold 39 850 Cold 39 > > 12100 Cold 39 24150 Cold 39 32200 Cold 39 44250 Cold 39 > > 54300 Cold 39 72350 Cold 39 80400 Cold 39 60450 Cold > > 39 100500 Cold 39 64550 Cold 39 54600 Cold 39 52650 Cold > > 39 38700 Cold 39 34750 Cold 39 36800 Cold 39 34850 Cold > > 39 28900 Cold 39 24950 Cold 39 221000 Cold 39 > > 201050 Cold 39 241100 Cold 39 221150 Cold 39 > > 221200 Cold 39 241250 Cold 39 261300 Cold 39 200 > > Cold 40 050 Cold 40 0100 Cold 40 2150 Cold 40 10200 > > Cold 40 16250 Cold 40 20300 Cold 40 24350 Cold 40 > > 28400 Cold 40 32450 Cold 40 36500 Cold 40 38550 Cold 40 > > 42600 Cold 40 44650 Cold 40 44700 Cold 40 44750 Cold > > 40 36800 Cold 40 28850 Cold 40 32900 Cold 40 30950 Cold > > 40 321000 Cold 40 261050 Cold 40 181100 Cold 40 > > 281150 Cold 40 261200 Cold 40 261250 Cold 40 > > 241300 Cold 40 220 Cold 41 050 Cold 41 0100 Cold > > 41 4150 Cold 41 14200 Cold 41 20250 Cold 41 26300 Cold > > 41 30350 Cold 41 36400 Cold 41 40450 Cold 41 42500 Cold > > 41 46550 Cold 41 50600 Cold 41 54650 Cold 41 58700 Cold > > 41 60750 Cold 41 64800 Cold 41 68850 Cold 41 70900 Cold > > 41 74950 Cold 41 761000 Cold 41 801050 Cold 41 > > 821100 Cold 41 841150 Cold 41 881200 Cold 41 > > 901250 Cold 41 921300 Cold 41 960 Cold 42 050 > > Cold 42 12100 Cold 42 26150 Cold 42 38200 Cold 42 > > 46250 Cold 42 54300 Cold 42 62350 Cold 42 70400 Cold 42 > > 76450 Cold 42 84500 Cold 42 92550 Cold 42 98600 Cold > > 42 106650 Cold 42 110700 Cold 42 118750 Cold 42 124800 > > Cold 42 130850 Cold 42 136900 Cold 42 140950 Cold 42 > > 1441000 Cold 42 1521050 Cold 42 1561100 Cold 42 > > 1621150 Cold 42 1661200 Cold 42 1701250 Cold 42 > > 1741300 Cold 42 1800 Cold 43 050 Cold 43 0100 Cold > > 43 0150 Cold 43 0200 Cold 43 0250 Cold 43 0300 Cold > > 43 0350 Cold 43 6400 Cold 43 8450 Cold 43 14500 Cold > > 43 18550 Cold 43 22600 Cold 43 24650 Cold 43 28700 Cold > > 43 30750 Cold 43 34800 Cold 43 36850 Cold 43 38900 Cold > > 43 40950 Cold 43 421000 Cold 43 441050 Cold 43 > > 461100 Cold 43 481150 Cold 43 501200 Cold 43 > > 521250 Cold 43 541300 Cold 43 560 Cold 44 050 > > Cold 44 0100 Cold 44 0150 Cold 44 8200 Cold 44 16250 > > Cold 44 24300 Cold 44 30350 Cold 44 36400 Cold 44 > > 40450 Cold 44 46500 Cold 44 52550 Cold 44 58600 Cold 44 > > 62650 Cold 44 66700 Cold 44 70750 Cold 44 74800 Cold > > 44 82850 Cold 44 84900 Cold 44 94950 Cold 44 1021000 > > Cold 44 1061050 Cold 44 1121100 Cold 44 1161150 > > Cold 44 1221200 Cold 44 1201250 Cold 44 1241300 > > Cold 44 1300 Cold 45 050 Cold 45 0100 Cold 45 0150 > > Cold 45 0200 Cold 45 8250 Cold 45 14300 Cold 45 20350 > > Cold 45 24400 Cold 45 30450 Cold 45 34500 Cold 45 > > 40550 Cold 45 44600 Cold 45 48650 Cold 45 52700 Cold 45 > > 56750 Cold 45 60800 Cold 45 64850 Cold 45 70900 Cold > > 45 74950 Cold 45 781000 Cold 45 821050 Cold 45 > > 861100 Cold 45 921150 Cold 45 941200 Cold 45 > > 981250 Cold 45 1021300 Cold 45 1060 Cold 46 050 > > Cold 46 0100 Cold 46 0150 Cold 46 0200 Cold 46 0250 > > Cold 46 0300 Cold 46 0350 Cold 46 0400 Cold 46 0450 > > Cold 46 0500 Cold 46 0550 Cold 46 0600 Cold 46 0650 > > Cold 46 0700 Cold 46 0750 Cold 46 0800 Cold 46 0850 > > Cold 46 2900 Cold 46 2950 Cold 46 21000 Cold 46 > > 21050 Cold 46 41100 Cold 46 21150 Cold 46 41200 > > Cold 46 41250 Cold 46 41300 Cold 46 40 Cold 47 > > 050 Cold 47 0100 Cold 47 0150 Cold 47 0200 Cold 47 > > 0250 Cold 47 0300 Cold 47 0350 Cold 47 0400 Cold 47 > > 4450 Cold 47 10500 Cold 47 16550 Cold 47 24600 Cold 47 > > 28650 Cold 47 36700 Cold 47 40750 Cold 47 44800 Cold 47 > > 48850 Cold 47 52900 Cold 47 56950 Cold 47 601000 Cold > > 47 641050 Cold 47 661100 Cold 47 701150 Cold 47 > > 721200 Cold 47 761250 Cold 47 781300 Cold 47 780 > > Cold 48 050 Cold 48 0100 Cold 48 0150 Cold 48 0200 > > Cold 48 8250 Cold 48 10300 Cold 48 18350 Cold 48 22400 > > Cold 48 24450 Cold 48 30500 Cold 48 18550 Cold 48 > > 26600 Cold 48 34650 Cold 48 26700 Cold 48 26750 Cold 48 > > 30800 Cold 48 32850 Cold 48 28900 Cold 48 30950 Cold > > 48 381000 Cold 48 181050 Cold 48 301100 Cold 48 > > 221150 Cold 48 261200 Cold 48 221250 Cold 48 > > 181300 Cold 48 280 Cold 49 050 Cold 49 0100 Cold > > 49 0150 Cold 49 0200 Cold 49 0250 Cold 49 0300 Cold 49 > > 0350 Cold 49 2400 Cold 49 6450 Cold 49 8500 Cold 49 > > 12550 Cold 49 18600 Cold 49 18650 Cold 49 22700 Cold 49 > > 24750 Cold 49 28800 Cold 49 28850 Cold 49 30900 Cold > > 49 32950 Cold 49 341000 Cold 49 301050 Cold 49 > > 421100 Cold 49 341150 Cold 49 401200 Cold 49 > > 341250 Cold 49 401300 Cold 49 320 Cold 50 050 > > Cold 50 0100 Cold 50 0150 Cold 50 0200 Cold 50 0250 > > Cold 50 0300 Cold 50 0350 Cold 50 4400 Cold 50 14450 > > Cold 50 20500 Cold 50 28550 Cold 50 34600 Cold 50 > > 40650 Cold 50 46700 Cold 50 52750 Cold 50 58800 Cold 50 > > 64850 Cold 50 68900 Cold 50 74950 Cold 50 781000 Cold > > 50 821050 Cold 50 861100 Cold 50 921150 Cold 50 > > 981200 Cold 50 1021250 Cold 50 1041300 Cold 50 > > 1060 Cold 51 050 Cold 51 0100 Cold 51 2150 Cold 51 > > 8200 Cold 51 14250 Cold 51 18300 Cold 51 22350 Cold 51 > > 28400 Cold 51 32450 Cold 51 36500 Cold 51 40550 Cold 51 > > 44600 Cold 51 48650 Cold 51 52700 Cold 51 54750 Cold > > 51 58800 Cold 51 62850 Cold 51 68900 Cold 51 72950 Cold > > 51 741000 Cold 51 781050 Cold 51 801100 Cold 51 > > 841150 Cold 51 881200 Cold 51 921250 Cold 51 > > 961300 Cold 51 980 Cold 52 050 Cold 52 0100 Cold > > 52 0150 Cold 52 0200 Cold 52 0250 Cold 52 0300 Cold 52 > > 2350 Cold 52 4400 Cold 52 8450 Cold 52 16500 Cold 52 > > 22550 Cold 52 32600 Cold 52 34650 Cold 52 40700 Cold 52 > > 40750 Cold 52 58800 Cold 52 64850 Cold 52 72900 Cold > > 52 76950 Cold 52 841000 Cold 52 901050 Cold 52 > > 961100 Cold 52 1001150 Cold 52 1061200 Cold 52 > > 1121250 Cold 52 1181300 Cold 52 1220 Cold 53 050 > > Cold 53 0100 Cold 53 0150 Cold 53 0200 Cold 53 2250 > > Cold 53 12300 Cold 53 20350 Cold 53 26400 Cold 53 > > 34450 Cold 53 38500 Cold 53 44550 Cold 53 50600 Cold 53 > > 54650 Cold 53 60700 Cold 53 66750 Cold 53 70800 Cold > > 53 72850 Cold 53 80900 Cold 53 82950 Cold 53 881000 > > Cold 53 921050 Cold 53 961100 Cold 53 1001150 > > Cold 53 1041200 Cold 53 1081250 Cold 53 1121300 > > Cold 53 1160 Cold 54 050 Cold 54 0100 Cold 54 0150 > > Cold 54 0200 Cold 54 0250 Cold 54 2300 Cold 54 8350 > > Cold 54 16400 Cold 54 22450 Cold 54 24500 Cold 54 > > 32550 Cold 54 36600 Cold 54 36650 Cold 54 42700 Cold 54 > > 50750 Cold 54 56800 Cold 54 58850 Cold 54 64900 Cold > > 54 66950 Cold 54 721000 Cold 54 741050 Cold 54 > > 781100 Cold 54 801150 Cold 54 841200 Cold 54 > > 861250 Cold 54 901300 Cold 54 940 Cold 55 050 > > Cold 55 0100 Cold 55 0150 Cold 55 2200 Cold 55 10250 > > Cold 55 18300 Cold 55 26350 Cold 55 30400 Cold 55 > > 38450 Cold 55 42500 Cold 55 48550 Cold 55 52600 Cold 55 > > 58650 Cold 55 64700 Cold 55 68750 Cold 55 74800 Cold > > 55 78850 Cold 55 84900 Cold 55 88950 Cold 55 941000 > > Cold 55 981050 Cold 55 1001100 Cold 55 1041150 > > Cold 55 1081200 Cold 55 1101250 Cold 55 1141300 > > Cold 55 1180 Cold 56 050 Cold 56 0100 Cold 56 0150 > > Cold 56 0200 Cold 56 0250 Cold 56 0300 Cold 56 0350 > > Cold 56 8400 Cold 56 14450 Cold 56 20500 Cold 56 24550 > > Cold 56 28600 Cold 56 30650 Cold 56 36700 Cold 56 > > 40750 Cold 56 44800 Cold 56 46850 Cold 56 50900 Cold 56 > > 54950 Cold 56 581000 Cold 56 601050 Cold 56 621100 > > Cold 56 661150 Cold 56 681200 Cold 56 701250 > > Cold 56 721300 Cold 56 760 Cold 57 050 Cold 57 > > 0100 Cold 57 0150 Cold 57 0200 Cold 57 0250 Cold 57 > > 0300 Cold 57 0350 Cold 57 0400 Cold 57 2450 Cold 57 > > 10500 Cold 57 12550 Cold 57 14600 Cold 57 16650 Cold 57 > > 16700 Cold 57 20750 Cold 57 20800 Cold 57 22850 Cold > > 57 24900 Cold 57 26950 Cold 57 261000 Cold 57 281050 > > Cold 57 301100 Cold 57 321150 Cold 57 321200 > > Cold 57 341250 Cold 57 361300 Cold 57 36 > > > > > > *Renato Filogonio* > > http://lattes.cnpq.br/0339937732653268 > > > > > > > > > > On Sat, Jul 27, 2024 at 12:13 AM Bede-Fazekas Ákos <bfalevl...@gmail.com > > > > wrote: > > > >> Dear Renato, > >> > >> I've never used this package and you did not attached a reproducible > >> example, so I cannot test my suggestion. Nevertheless, please try > >> converting the column "i" to factor before calling the t2way() and > >> mcp2atm() functions, and replace "as.factor(i)" with "i" in the model > >> formulas: > >> khg$i <- as.factor(khg$i) > >> t2way(formula = fr ~ t * i, data = khg) > >> mcp2atm(fr ~ t * i, data = khg) > >> Since you read the khg.txt file with stringsAsFactors = TRUE > >> parameterization, the factor conversion can be skipped if "i" contained > >> text. If it contained numbers, then the conversion is needed. > >> > >> HTH, > >> Ákos > >> ______________ > >> Ákos Bede-Fazekas > >> Centre for Ecological Research, Hungary > >> > >> 2024. 07. 27. 0:23 keltezéssel, Renato Filogonio írta: > >>> Dear list, > >>> I used a robust two-way ANOVA using the WRS2 package (R v.4.4.1), using > >> the > >>> following code as suggested by Mair and Wilcox (2020) > >>> > >>> library(WRS2) > >>> > >>> khg<-read.table("khg.txt", h = T, dec = ".", sep = "\t", > >>> stringsAsFactors=T, na.strings = "NA") > >>> > >>> t2way(fr ~ t * as.factor(i), data = khg) > >>> > >>> > >>> This worked fine, so it returned: > >>> > >>> Call: > >>> t2way(formula = fr ~ t * as.factor(i), data = khg) > >>> > >>> value p.value > >>> t 133.0420 0.001 > >>> as.factor(i) 3317.8926 0.001 > >>> t:as.factor(i) 150.6804 0.001 > >>> > >>> > >>> When I run the pairwise comparison using mcp2atm(), I get: > >>> > >>> mcp2atm(fr ~ t * as.factor(i), data = khg) > >>> > >>> Error in `[.data.frame`(data, variable.names(mf)) : > >>> > >>> undefined columns selected > >>> > >>> So, it is basically the same code for the same dataframe but another > >>> function from the same package, but now I get an error message. I tried > >> to > >>> look at the pairwiseRobustTest() function from the package 'rcompanion' > >> but > >>> it is now [Defunct!] as in the last version of 'rcompanion', so I am > >> afraid > >>> I am running out of options... Any thoughts on how to circumvent this > >>> problem? > >>> I have posted the dataset here: > >>> > >> > https://stackoverflow.com/questions/78800048/error-using-mcp2atm-function-for-robust-pairwise-comparisons-undefined-columns > >>> Thanks in advance! > >>> > >>> Renato > >>> > >>> > >>> > >>> *Renato Filogonio* > >>> http://lattes.cnpq.br/0339937732653268 > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> _______________________________________________ > >>> R-sig-ecology mailing list > >>> R-sig-ecology@r-project.org > >>> https://stat.ethz.ch/mailman/listinfo/r-sig-ecology > >> _______________________________________________ > >> R-sig-ecology mailing list > >> R-sig-ecology@r-project.org > >> https://stat.ethz.ch/mailman/listinfo/r-sig-ecology > >> > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-sig-ecology mailing list > > R-sig-ecology@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-ecology > > _______________________________________________ > R-sig-ecology mailing list > R-sig-ecology@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-ecology > [[alternative HTML version deleted]] _______________________________________________ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology
