Thanks, Saint Pai, that did the trick! Paul
On Wed, Oct 11, 2017 at 12:33 PM, Pai <mk...@redhat.com> wrote: > Hello, > > Could you please test the solution at > https://stackoverflow.com/questions/45318188/getting-error-in-function-igraph-write-graph-graphml-while-installing-igrap > > Specifically - > > install.packages("devtools") > library(devtools) > install_github("igraph/rigraph") > > Please let us know if this works > > Regards, > -- Saint Pai > > > On Tue, Oct 10, 2017 at 01:40:53AM +0100, Paul Smith wrote: >> On Mon, Oct 9, 2017 at 4:42 PM, Tom Callaway <tcall...@redhat.com> wrote: >> > >> > On 10/09/2017 11:16 AM, Paul Smith wrote: >> >> >> >> I am trying to install >> >> >> >> igraph package >> >> >> >> but getting the following error: >> >> >> >> ------------------ >> >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1 >> >> ERROR: compilation failed for package ‘igraph’ >> >> * removing ‘/usr/lib64/R/library/igraph’ >> >> ------------------ >> >> >> >> Any ideas? >> > >> > Need to see a lot more logs, specifically, the items before that Error >> > occurs. >> >> Thanks, Tom. Below, you can find more logs: >> >> --------------------- >> # define strdup igraph_i_strdup >> >> In file included from /usr/include/string.h:634:0, >> from src/foreign-gml-parser.y:54: >> /usr/include/bits/string2.h:208:0: note: this is the location of the >> previous definition >> # define strdup(s) __strdup (s) >> >> gcc -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -DUSING_R >> -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include >> -ICOLAMD/Include -ISuiteSparse_config -I/usr/local/include -O2 -g >> -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 >> -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 >> -m64 -mtune=generic -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT >> -DPACKAGE_VERSION=\"1.1.1\" -DINTERNAL_ARPACK >> -DIGRAPH_THREAD_LOCAL=/**/ -fpic -O2 -g -pipe -Wall >> -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions >> -fstack-protector-strong --param=ssp-buffer-size=4 >> -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 >> -m64 -mtune=generic -c foreign-graphml.c -o foreign-graphml.o >> foreign-graphml.c: In function ‘igraph_write_graph_graphml’: >> foreign-graphml.c:1408:46: error: expected ‘)’ before ‘GRAPHML_NAMESPACE_URI’ >> ret=fprintf(outstream, "<graphml xmlns=\"" GRAPHML_NAMESPACE_URI "\"\n"); >> ^~~~~~~~~~~~~~~~~~~~~ >> foreign-graphml.c:1412:59: error: expected ‘)’ before ‘GRAPHML_NAMESPACE_URI’ >> ret=fprintf(outstream, " xsi:schemaLocation=\"" >> GRAPHML_NAMESPACE_URI "\n"); >> >> ^~~~~~~~~~~~~~~~~~~~~ >> foreign-graphml.c:1414:38: error: expected ‘)’ before ‘GRAPHML_NAMESPACE_URI’ >> ret=fprintf(outstream, " " GRAPHML_NAMESPACE_URI >> "/1.0/graphml.xsd\">\n"); >> ^~~~~~~~~~~~~~~~~~~~~ >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1 >> ERROR: compilation failed for package ‘igraph’ >> * removing ‘/usr/lib64/R/library/igraph’ >> >> The downloaded source packages are in >> ‘/tmp/Rtmpq4eKlz/downloaded_packages’ >> Updating HTML index of packages in '.Library' >> Making 'packages.html' ... done >> Warning message: >> In install.packages("igraph") : >> installation of package ‘igraph’ had non-zero exit status >> --------------------- >> >> Are they enough logs? >> >> Paul >> >> _______________________________________________ >> R-SIG-Fedora mailing list >> R-SIG-Fedora@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-fedora > > -- > Regards, > M K Pai > Data Scientist > Red Hat _______________________________________________ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora