This doesn't seem to be a permission issue, as there are several other
compiled modules in the R library directory. It seems pretty clear that
either libgdal.so.1 is pointing to the wrong place, or does not have
references to PROJ.4.
Any ideas? Any hints? I could sure use the extra computing power right now.
Thanks!
JP
On Sat, Oct 1, 2011 at 11:15 AM, JP Glutting <jpglutt...@gmail.com> wrote:
> Hi,
>
> I am trying to do some heavy analysis on a server that I have been given an
> account on. It is running Debian lenny, so the version of R is 2.7, and I
> need at least 2.10.
>
> I have downloaded and installed R 2.13 and gdal 1.8.1 into a local
> directory /home/jpglutting/local (with bin/ lib/ include/ etc. in there). I
> have pre-pended /home/jpglutting/local/bin to my path.
>
> R works fine and I can all the packages (using
> "--prefix=/home/jpglutting/local") I need and get everything working fine
> except rgdal. gdal-config and gdalwarp seem to work fine (I didn't test
> them, but I did call the from the command line, and they return the normal
> usage information). From the R prompt I am running:
>
> install.packages("rgdal",
> configure.args="--with-proj-lib=/home/jpglutting/local/lib"), but I get the
> following error when trying to install rgdal:
>
> *** R*
> *** inst*
> *** preparing package for lazy loading*
> *** help*
> **** installing help indices*
> *** building package indices ...*
> *** testing if installed package can be loaded*
> *Error in dyn.load(file, DLLpath = DLLpath, ...) : *
> * unable to load shared object
> '/home/jpglutting/local/lib64/R/library/rgdal/libs/rgdal.so':*
> * libgdal.so.1: cannot open shared object file: No such file or directory
> *
> *Error: loading failed*
> *Execution halted*
> *ERROR: loading failed*
> ** removing /home/jpglutting/local/lib64/R/library/rgdal*
> *
> *
> *The downloaded packages are in*
> * /tmp/RtmpOcXpYE/downloaded_packages*
> *Updating HTML index of packages in '.Library'*
> *Making packages.html ... done*
> *Warning message:*
> *In install.packages("rgdal", configure.args =
> "--with-proj-lib=/home/jpglutting/local/lib") :*
> * installation of package 'rgdal' had non-zero exit status*
>
> The problem seems to be farther up, where I get:
>
> *checking for pj_init_plus in -lproj... yes*
> *./proj_conf_test: error while loading shared libraries: libgdal.so.1:
> cannot open shared object file: No such file or directory*
> *PROJ.4 Version 4.7 or earlier*
> *./proj_conf_test: error while loading shared libraries: libgdal.so.1:
> cannot open shared object file: No such file or directory*
> *./proj_conf_test: error while loading shared libraries: libgdal.so.1:
> cannot open shared object file: No such file or directory*
> *Package CPP flags: -I/home/jpglutting/local/include*
> *Package LIBS: -L/home/jpglutting/local/lib -L/home/jpglutting/local/lib
> -lgdal*
> *configure: creating ./config.status*
> *config.status: creating src/Makevars*
> *** libs*
>
> The file libgdal.so.1 does exist, in /home/jpglutting/local/lib. It is a
> symlink to libgdal.so.1.15.1. I am not sure what proj_conf_test is, but it
> seems to either not be finding libgdal.so.1 or not finding the PROJ.4
> libraries. I installed PROJ.4 version 4.7.0, just in case (although I
> believe they are included with the GDAL source). The include directories for
> proj are in /home/jpglutting/local/include/proj. Do I need to include the
> proj sub-directory as well?
>
> I am not sure what the problem is, whether it is within libgdal.so.1 trying
> to call PROJ.4 or whether there is a problem finding/loading libgdal.so.1
> itself. It seems to be the latter, but R seems to know to look in
> /home/jpglutting/local/lib, so I am not sure what else to do. Is there
> another argument I should be passing to the R installer?
>
> Has anyone seen this kind of error before?
>
> Thanks!
> JP
>
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