Yep, that did it. Sent a bug report to the Stat-et folks -- they were
overwriting the LD_LIBRARY_PATH (and not preserving the already-established
one).
--j
On Thu, Feb 9, 2012 at 9:20 AM, Paul Hiemstra <paul.hiems...@knmi.nl> wrote:
> The env. variable you need is probably LD_LIBRARY_PATH...
>
> cheers,
> Paul
>
> On 02/08/2012 10:18 PM, Jonathan Greenberg wrote:
> > R-sig-geo'ers:
> >
> > I'm trying to get the Eclipse plugin for R ("Stat-et") working, but I've
> > run into a curious problem with rgdal I was hoping to get some help with.
> > When loading rgdal from within the remote connection in Eclipse, I get
> > this error:
> >
> >> require("rgdal")
> > Loading required package: rgdal
> > Error in dyn.load(file, DLLpath = DLLpath, ...) :
> > unable to load shared object
> > '/usr/apps/oa/lib64/R/library/rgdal/libs/rgdal.so':
> > libgdal.so.1: cannot open shared object file: No such file or directory
> >
> > Other packages work fine via the remote "load", e.g.:
> >> require("raster")
> > Loading required package: raster
> > raster version 1.9-64 (16-January-2012)
> >
> >
> > Curiously, when launch of R via the command line (connecting to the same
> > server as above via SSH) I get the normal, no-problem load:
> >> require("rgdal")
> > Loading required package: rgdal
> > Loading required package: sp
> > Geospatial Data Abstraction Library extensions to R successfully loaded
> > Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
> > Path to GDAL shared files: /usr/apps/oa/share/gdal
> > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> > Path to PROJ.4 shared files: (autodetected)
> >
> > I suspect something is going on with the environment variables between
> the
> > Stat-ET launching of R, and the command-line launching. A Sys.getenv()
> > reveals that the environment variables are different, but I'm unclear
> which
> > variable(s?) I should be looking for to fix this problem (or perhaps it
> is
> > another issue altogether). Thoughts? Cheers!
> >
> > --j
> >
> >
> >
>
>
> --
> Paul Hiemstra, Ph.D.
> Global Climate Division
> Royal Netherlands Meteorological Institute (KNMI)
> Wilhelminalaan 10 | 3732 GK | De Bilt | Kamer B 3.39
> P.O. Box 201 | 3730 AE | De Bilt
> tel: +31 30 2206 494
>
> http://intamap.geo.uu.nl/~paul
> http://nl.linkedin.com/pub/paul-hiemstra/20/30b/770
>
>
--
Jonathan A. Greenberg, PhD
Assistant Professor
Department of Geography
University of Illinois at Urbana-Champaign
607 South Mathews Avenue, MC 150
Urbana, IL 61801
Phone: 415-763-5476
AIM: jgrn307, MSN: jgrn...@hotmail.com, Gchat: jgrn307, Skype: jgrn3007
http://www.geog.illinois.edu/people/JonathanGreenberg.html
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