Dear Ryan, You **first** need to install the dependencies of rgdal.
sudo apt-get update && sudo apt-get install libgdal-dev libproj-dev Then you should be able to install rgdal. For more details google "rgdal install linux" Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey 2017-06-19 16:33 GMT+02:00 Ryan Runquist <rdbrunqu...@gmail.com>: > Hello, > > I am working on manipulating some spatial data and performing SDMs on > invasive species. I have been using R and the package 'rgdal' to do some of > these analyses. > > On my own computer, Mac OSX 10.12.2 running R 3.3.3, I have had not > problems installing 'rgdal', loading the library, and using the functions. > > However, we are starting to work on the UMN MSI facility and we are having > problems installing 'rgdal' on their Linux supercomputing cluster. > > In order to install this package, we have to load the GDAL library and the > PROJ4 library in Linux. We have not had any problems loading their GDAL > module and accessing the libraries. They work fine for 'rgeos'. However, we > are having problems with the PROJ module. > > When we run 'install.packages('rgdal')', the installation process begins, > but it stalls when it checks for "'pj_init_plus' in -lproj", and then > fails. > > We have been working with someone at MSI to remedy this problem. They are > able to see that the file does in fact exist and don't know why 'rgdal' is > having problems locating it. > > So far, we have tried different versions of PROJ (Proj 4.4.9, Proj 4.9.2, > Proj 4.9.3_gcc4.8.2 - meaning it was compiled with gcc 4.8.2) and they have > complied PROJ with GCC 4.8.2 instead of their default complier. They also > tried to compile it with GCC 6.3, but that failed with a complier error. > > I have copied the full error message below. > > Sincerely, > > Ryan > > > > > install.packages("rgdal") > Installing package into ‘/panfs/roc/groups/7/ > moeller/rbriscoe/R/x86_64-pc- > linux-gnu-library/3.3’ > (as ‘lib’ is unspecified) > --- Please select a CRAN mirror for use in this session --- > trying URL 'https://mirror.las.iastate.edu/CRAN/src/contrib/rgdal_1. > 2-7.tar.gz' > Content type 'application/x-gzip' length 1653897 bytes (1.6 MB) > ================================================== > downloaded 1.6 MB > > * installing *source* package ‘rgdal’ ... > ** package ‘rgdal’ successfully unpacked and MD5 sums checked > configure: CC: /panfs/roc/msisoft/gcc/6.1.0/bin/gcc > configure: CXX: /panfs/roc/msisoft/gcc/6.1.0/bin/g++ > configure: rgdal: 1.2-7 > checking for /usr/bin/svnversion... yes > configure: svn revision: 660 > checking for gdal-config... /panfs/roc/msisoft/gdal/2.0.1/bin/gdal-config > checking gdal-config usability... yes > configure: GDAL: 2.0.1 > checking GDAL version >= 1.6.3... yes > checking for gcc... /panfs/roc/msisoft/gcc/6.1.0/bin/gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether /panfs/roc/msisoft/gcc/6.1.0/bin/gcc accepts -g... yes > checking for /panfs/roc/msisoft/gcc/6.1.0/bin/gcc option to accept ISO > C89... none needed > checking how to run the C preprocessor... /panfs/roc/msisoft/gcc/6.1.0/b > in/gcc > -E > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking gdal.h usability... yes > checking gdal.h presence... yes > checking for gdal.h... yes > checking gdal: linking with --libs only... yes > checking GDAL: /soft/gdal/2.0.1/share/gdal/pcs.csv readable... yes > checking proj_api.h usability... yes > checking proj_api.h presence... yes > checking for proj_api.h... yes > checking for pj_init_plus in -lproj... no > configure: error: libproj not found in standard or given locations. > ERROR: configuration failed for package ‘rgdal’ > * removing ‘/panfs/roc/groups/7/moeller/rbriscoe/R/x86_64-pc- > linux-gnu-library/3.3/rgdal’ > > The downloaded source packages are in > ‘/tmp/RtmpBVhI5E/downloaded_packages’ > Warning message: > In install.packages("rgdal") : > installation of package ‘rgdal’ had non-zero exit status > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-Geo mailing list > R-sig-Geo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-geo [[alternative HTML version deleted]] _______________________________________________ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo