-------- Message original -------- Sujet: Re: [R-sig-Geo] CRAN releases of sp, rgdal and rgeos Date: Lundi 11 Juin 2018 08:24 GMT De: "Gilles Benjamin Leduc" <g...@hi.is> Pour: roger.biv...@nhh.no Here it is:
> sessionInfo() R version 3.4.2 (2017-09-28) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.5 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib locale: [1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] RColorBrewer_1.1-2 seqinr_3.4-5 loaded via a namespace (and not attached): [1] MASS_7.3-50 compiler_3.4.2 tools_3.4.2 ade4_1.7-11 installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/utf8/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (utf8) Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) : unknown timezone 'zone/tz/2018c.1.0/zoneinfo/Europe/Helsinki' * installing *source* package ‘rgdal’ ... ** package ‘rgdal’ correctement décompressé et sommes MD5 vérifiées configure: CC: clang configure: CXX: clang++ configure: rgdal: 1.3-2 checking for /usr/bin/svnversion... yes configure: svn revision: 755 checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking whether clang++ supports C++11 features by default... no checking whether clang++ supports C++11 features with -std=gnu++11... yes configure: C++11 support available checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package ‘rgdal’ * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rgdal’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rgdal’ Les packages source téléchargés sont dans ‘/private/var/folders/j0/gxxcvrr13rgg1xwfmf01yb240000gn/T/RtmpUleCF6/downloaded_packages’ Warning message: In install.packages(update[instlib == l, "Package"], l, repos = repos, : l'installation du package ‘rgdal’ a eu un statut de sortie non nul Have a nice Monday Benjamin Le Lundi 11 Juin 2018 07:53 GMT, Roger Bivand <roger.biv...@nhh.no> a écrit: > On Mon, 11 Jun 2018, Gilles Benjamin Leduc wrote: > > > Good monday! > > > > I tried to update rgdal, I get a warning telling me the installation had > > a non-null exit status. I haven't cheak if it was working…> > Thanks for responding - every user data point helps! > > Could you please provide the output of sessionInfo(), and any error > > messages you see on trying to update? > > Roger > > > > > Benjamin > > > > > > Le Vendredi 8 Juin 2018 18:15 GMT, Roger Bivand <roger.biv...@nhh.no> a > > écrit: > > > >> There are new releases of sp, rgdal and rgeos on CRAN. Please install sp > >> first, then the other two, which link to the installed sp. They all > > > >> address so-called rchk issues, which have not so far been a problem, but > >> might have become more fragile as R's internal memory management is made > >> even more efficient. This involves compiled code using memory allocated by > >> R to be freed by R's garbage collector, which has to know if an object is > >> still being used. Tomas Kalibera, the author of rchk, helped resolve and > >> explain the issues encountered - what was good coding practice fifteen > >> years ago isn't always still good practice. > >> > >> In addition, the earliest versions of GDAL and PROJ with which rgdal will > >> work have been updated, and set to PROJ 4.8.0 and GDAL 1.11.4. The current > >> released versions of PROJ and GDAL are to be prefered, as bugs have been > >> fixed and new features and drivers introduced. A check has been put > > > >> in place to trap attempts to install rgdal without a C++11-capable> >> > >> compiler when the GDAL version is >=2.3.0 - which requires C++11. rgeos is > >> ready for the forthcoming version of GEOS. > >> > >> The CRAN team has also been very supportive of our efforts to bring > > > >> compiled code in these packages into rchk compliance. > >> > >> Please get in touch if you see any loose ends in these releases. > >> > >> Roger > >> > >> -- > >> Roger Bivand > >> Department of Economics, Norwegian School of Economics, > >> Helleveien 30, N-5045 Bergen, Norway. > >> voice: +47 55 95 93 55; e-mail: roger.biv...@nhh.no > >> http://orcid.org/0000-0003-2392-6140 > >> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en > >> > >> _______________________________________________ > >> R-sig-Geo mailing list > >> R-sig-Geo@r-project.org > >> https://stat.ethz.ch/mailman/listinfo/r-sig-geo > > > > > > > > > > > > -- > Roger Bivand > Department of Economics, Norwegian School of Economics, > Helleveien 30, N-5045 Bergen, Norway. > voice: +47 55 95 93 55; e-mail: roger.biv...@nhh.no > http://orcid.org/0000-0003-2392-6140 > https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en _______________________________________________ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo