On Tue, 29 Oct 2019, Eduardo Diez wrote:
Roger,
Yes sorry about the confusion. Domino is a company (dominodatalab.com) that
offers a an environment for data science. It's based on docker images. On
one of those images I installed sf and lwgeom. What information should I
get from the image that helps identify the source of the problem?
What OS is the docker image running; where do they get the image? Please
do raise this as an issue, this is not the best channel for this, and
nobody else uses this image I guess. The problem is most likely that the
image does not have the necessary underlying external requirements set up
correctly.
Roger
Thanks,
Best
El mar., 29 oct. 2019 05:54, Roger Bivand <roger.biv...@nhh.no> escribió:
On Mon, 28 Oct 2019, Eduardo Diez wrote:
Hi everyone.
I'm having problems running spatial processes in a domino machine. I
Please raise an issue on https://github.com/r-spatial/sf/issues, giving
much more detail about your installation (domino is unknown to everybody
but yourself, duckduckgo says: "Domino Machine manufactures blow out
preventers, stuffing boxes, and API products"). Likely cause - failed
installation of lwgeom, or multiple installs of external software. Avoid
posting HTML.
Roger
created a new environment with updated spatial packages but I'm unable to
run simple tasks. Below an example and some information:
library(sf)Linking to GEOS 3.6.2, GDAL 2.4.2, PROJ 4.9.3> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] sf_0.8-0
loaded via a namespace (and not attached):
[1] compiler_3.6.1 magrittr_1.5 class_7.3-15 tools_3.6.1
[5] DBI_1.0.0 units_0.6-5 Rcpp_1.0.2
KernSmooth_2.23-16
[9] grid_3.6.1 e1071_1.7-2 classInt_0.4-2
sf_extSoftVersion()
GEOS GDAL proj.4 GDAL_with_GEOS USE_PROJ_H
"3.6.2" "2.4.2" "4.9.3" "true" "false"
nc = st_read(system.file("shape/nc.shp", package="sf"))
Reading layer `nc' from data source
`/usr/local/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI
Shapefile'
Simple feature collection with 100 features and 14 fields
geometry type: MULTIPOLYGON
dimension: XY
bbox: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax:
36.58965
epsg (SRID): 4267
proj4string: +proj=longlat +datum=NAD27 +no_defs
asd <- st_area(nc[1,]) # area from long/lat
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: CPL_crs_parameters(x$proj4string)
2: structure(CPL_crs_parameters(x$proj4string), names =
c("SemiMajor", "SemiMinor", "InvFlattening", "units_gdal",
"IsVertical", "WktPretty", "Wkt"))
3: crs_parameters(crs) 4: st_crs.sfc(st_geometry(x), parameters = TRUE)
5: st_crs(st_geometry(x), parameters = TRUE)
6: lwgeom::st_geod_area(x)
7: st_area.sfc(st_geometry(x, ...))
8: st_area(st_geometry(x, ...))
9: st_area.sf(nc[1, ])
10: st_area(nc[1, ])
An irrecoverable exception occurred. R is aborting now ...Segmentation
fault (core dumped)
Thanks in advance
Best,
Edu
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Roger Bivand
Department of Economics, Norwegian School of Economics,
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voice: +47 55 95 93 55; e-mail: roger.biv...@nhh.no
https://orcid.org/0000-0003-2392-6140
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--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: roger.biv...@nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
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