On Tue, 29 Oct 2019, Edzer Pebesma wrote:
Would you mind giving the ouptut of:
pkg-config proj --libs
pkg-config proj --cflags
and also try:
install.packages("rgdal", repos="http://R-Forge.R-project.org";)
Preferably not this, not currently stable. Latest CRAN release was stable.
Roger
On 10/29/19 7:11 AM, Tomislav Hengl wrote:
Thanks Edzer,
I removed my gdal (which removes also all QGIS and everything connect
unfortunately) then I followed your steps and I get (somehow the proj
version is still 5 and not 6):
install.packages("rgdal")
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left
Speed
100 1631k 100 1631k 0 0 713k 0 0:00:02 0:00:02 --:--:--
713k
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 1.3-3
checking for /usr/bin/svnversion... yes
configure: svn revision: 759
checking whether g++ supports C++11 features by default... yes
configure: C++11 support available
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.4.2
checking C++11 support for GDAL >= 2.3.0... yes
checking GDAL version >= 1.11.4... yes
checking gdal: linking with --libs only... yes
checking GDAL: /usr/share/gdal/pcs.csv readable... yes
configure: pkg-config proj exists, will use it
configure: PROJ version: 5.2.0
checking proj_api.h presence and usability... no
configure: error: proj_api.h not found in standard or given locations.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/opt/microsoft/ropen/3.5.1/lib64/R/library/rgdal’
* restoring previous ‘/opt/microsoft/ropen/3.5.1/lib64/R/library/rgdal’
The downloaded source packages are in
‘/data/RTMP/Rtmpl5wj21/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("rgdal") :
installation of package ‘rgdal’ had non-zero exit status
what am I doing wrong?
On 10/28/19 10:36 PM, Edzer Pebesma wrote:
Hi Tom,
formerly PROJ.4 is now called PROJ.
Have you also tried the usual ubuntu install suggestions we give to
R/ubuntu users, e.g. on https://github.com/r-spatial/sf ?
They are:
sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable
sudo apt-get update
sudo apt-get install libudunits2-dev libgdal-dev libgeos-dev libproj-dev
On 10/28/19 4:34 PM, Tomislav Hengl wrote:
Dear R-sig-geo,
I am trying to install proj4 v6 on Ubuntu 18.04 bionic. I though I can
install it simply by following the ubuntugis steps
(https://mothergeo-py.readthedocs.io/en/latest/development/how-to/gdal-ubuntu-pkg.html)
but this does not lead to newest version of proj4 v6.
Then I have tried to follow the proj6 steps
(https://proj.org/install.html#install) which indicate that I should do
it via the Anaconda installer. After I installed proj4 v6 from conda
I get:
$ which proj
/home/tomislav/anaconda2/bin/proj
$ proj -V
Rel. 6.2.0, September 1st, 2019
<proj>:
projection initialization failure
cause: no arguments in initialization list
program abnormally terminated
After that I've added the 'PROJ_LIB = /home/tomislav/anaconda2/bin/proj
' to my .Renviron file and then I get:
install.packages("rgdal")
Installing package into
‘/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
...
checking PROJ.4: epsg found and readable... no
Error: proj/epsg not found
Either install missing proj support files, for example
the proj-nad and proj-epsg RPMs on systems using RPMs,
or if installed but not autodetected, set PROJ_LIB to the
correct path, and if need be use the --with-proj-share=
configure argument.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
$gdalinfo --version
GDAL 2.4.0, released 2018/12/14
What am I doing wrong? Which tutorial / documentation do you advise to
install proj4 v6 and rgdal package on Ubuntu?
thank you (especially you Roger!),
T. Hengl
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--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: roger.biv...@nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
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