Dear Michael Summer, Thanks a lot for your swift reply. I will give a try to the procedure you mentioned. Kind regards, Gabriel
On Sat, Nov 13, 2021 at 12:14 PM Michael Sumner <mdsum...@gmail.com> wrote: > try terra::rast() or stars::read_stars() on the file, both use gdal to > interrogate and read. What you get depends on the structure of the files, > variables interpreted as subdatasets. stars is more general but sees > variables as 2D arrays with bands, terra calls these bands layers. > > Alternatively try raster::raster() or RNetCDF or tidync which might be > more straightforward than rhdf5 but all are quite different to each other > and to the gdal view. > > hth > > On Sat, 13 Nov 2021, 18:56 Gabriel Cotlier, <gabikl...@gmail.com> wrote: > >> Hello, >> >> I would like to be able to visualize / plot a specific data layer within >> the structure a hierarchical data file format .h5 in R. I could observe >> the structure as follows : >> >> library(rhdf5) >> r= h5ls(file.choose()) >> r >> >> and also in this way identify the Group and Name of the data to be >> plotted, >> however I've tried I could not access the data itself, nor plot it as a >> raster layer with its corresponding geographic coordinates. >> I would like to be able to select such data, plot it as a raster layer and >> if possible save it as GeoTIFF file format to be further processed with >> the >> raster package as a common raster layer. >> >> If any small guidance example, reprex, of this procedure is possible >> it would be appreciated. >> >> Thanks a lot in advance >> Kind regards, >> Gabriel Cotlier >> -- >> Gabriel Cotlier, PhD >> Haifa Research Center for Theoretical Physics and Astrophysics (HCTPA) >> University of Haifa >> Israel >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> R-sig-Geo mailing list >> R-sig-Geo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-geo >> > [[alternative HTML version deleted]] _______________________________________________ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo