Hi to all I am working on Python and Rpy to make automatic interpolations. I need to use the sp library of R.
When Rpy calls my R scripts it creates an error saying that the sp package can't be loaded. But inside the R environment everything works ok. When I removed sp and then reinstalled I got the following error: trying URL 'http://rm.mirror.garr.it/mirrors/CRAN/src/contrib/sp_0.9-14.tar.gz' Content type 'application/x-gzip' length 359180 bytes opened URL ================================================== downloaded 350Kb * Installing *source* package 'sp' ... ** libs Error in library.dynam(lib, package, package.lib) : shared library 'sp' not found In addition: Warning messages: 1: package 'sp' contains no R code in: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = keep.source) 2: S3 methods ‘as.data.frame.SpatialPoints’, ‘as.data.frame.SpatialPixels’, ‘as.data.frame.SpatialGrid’, ‘as.data.frame.SpatialPointsDataFrame’, ‘as.data.frame.SpatialPixelsDataFrame’, ‘as.data.frame.SpatialGridDataFrame’, ‘as.data.frame.SpatialLinesDataFrame’, ‘as.data.frame.SpatialPolygonsDataFrame’, ‘as.data.frame.GridTopology’, ‘as.matrix.SpatialGridDataFrame’, ‘as.matrix.SpatialPixelsDataFrame’, ‘cbind.SpatialGridDataFrame’, ‘contour.SpatialPixelsDataFrame’, ‘contour.SpatialGridDataFrame’, ‘dim.SpatialPointsDataFrame’, ‘image.SpatialPixelsDataFrame’, ‘image.SpatialGridDataFrame’, ‘lines.Line’, ‘lines.Lines’, ‘lines.SpatialLines’, ‘lines.SpatialLinesDataFrame’, ‘names.SpatialPointsDataFrame’, ‘names.SpatialPixelsDataFrame’, ‘names.SpatialGridDataFrame’, ‘names.SpatialLinesDataFrame’, ‘names.SpatialPolygonsDataFrame’, ‘names<-.SpatialPointsDataFrame’, ‘names<-.SpatialPolygonsDa [... truncated] During startup - Warning message: package sp in options("defaultPackages") was not found gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c gcdist.c -o gcdist.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c pip.c -o pip.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c Rcentroid.c -o Rcentroid.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c zerodist.c -o zerodist.o gcc -std=gnu99 -shared -L/usr/local/lib -o sp.so gcdist.o init.o pip.o Rcentroid.o zerodist.o -L/usr/local/lib/R/lib -lR ** R ** data ** demo ** inst ** preparing package for lazy loading Error in code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, : name space must not be loaded. Execution halted ERROR: lazy loading failed for package 'sp' ** Removing '/usr/local/lib/R/library/sp' The downloaded packages are in /tmp/RtmpttNUa3/downloaded_packages Warning message: installation of package 'sp' had non-zero exit status in: install.packages() Also I managed to get some extra info from Rpy, where it says the sp library isn't loaded because of R_alloc() and some namespace problem(?). Can anyone give me some help on understanding what is the problem and how to fix it ?? Thanks Jorge -- Eng. Jorge Samuel Mendes de Jesus European Commission (EC) Joint Research Centre Directorate (DG JRC) Institute for Environment and Sustainability (IES) TP 441, Via Fermi 1 21020 Ispra (VA) Italy Phone: +39 0332 78 3536 Fax: +39 0332 78 5466 http://rem.jrc.cec.eu.int "The views expressed are purely those of the writer and may not in any circumstances be regarded as stating an official position of the European Commission" _______________________________________________ R-sig-Geo mailing list R-sig-Geo@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-geo
