Have you tried

Map1 <- Map[1:100,1:100]
?

Note that this works differently for SpatialGridDataFrames and SpatialPixelsDataFrames; the first knows about [rows,cols,bands], the second about [pixels, bands].
--
Edzer

Yong Li wrote:
Dear All,

I want to subset a large spatial grid (2000*2000) into many smaller
grids for further processing in my simulation models. Could anyone do it
before and any tips will be highly appreciated?

Library(rgdal)
Map <- readGDAL("yong.img")  # one image from erdras imagine
Map$va <- Map$band1
Map$band1 <- NULL
????
Map1 <- a subset of Map$va based on selected cols and rows.
????......

Cheers

Yong Li

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