Thanks David,
On 04/03/2012, at 12:58 PM, David Winsemius wrote:
>> sh: make: command not found
>> ERROR: compilation failed for package ‘surveillance’
>
> Because it says that make is not found it would suggest that you need to
> provide more details about which version and where the developer tools were
> installed. I'm wondering if the PATH for R may not include the proper
> location.
>
> This package also require package:spc. The one that was used when I just
> compiled from source on a Leopard machine was spc_0.4.1.
My lack of low-level understanding may well be at fault here by the path for r
do you mean this result from the Sys.getenv() call
in the GUI: PATH "/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin"
in which case - none of them have a make in the them. There are however 'make'
commands in :
/Developer/usr/bin (the old Xcode)
and
/Applications/Xcode.app/Contents/Developer/usr (I'm guessing the new one for
Lion)
In the terminal
PATH
"/Library/Frameworks/PROJ.framework/Programs:/Library/Frameworks/GDAL.framework/Programs:/Library/Frameworks/MapServer.framework/Programs:/usr/local/pgsql/bin:/usr/local/mysql/bin:/usr/local/zend/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/X11/bin:/Developer/usr/bin:."
Which I guess explains the different error messages: So I added the new Xcode
location to the system path, and re-ran R in the terminal and tried again :
still no joy - still can't find stdlib.h etc. Is there something else I've
missed?
cheers
Ben
> install.packages(c('/Users/benmadin/Desktop/rgeos_0.2-3.tar.gz'),
> type='source', configure.args =
> '--with-geos-config=/Library/Frameworks/GEOS.framework/unix/bin/geos-config',
> repos=NULL)
* installing *source* package ‘rgeos’ ...
** package ‘rgeos’ successfully unpacked and MD5 sums checked
geos-config: /Library/Frameworks/GEOS.framework/unix/bin/geos-config
GEOS: 3.3.2dev
./configure: line 1263: test: 332dev: integer expression expected
CPPFLAGS: -I/Library/Frameworks/GEOS.framework/Versions/3/unix/include
LIBS: -L/Library/Frameworks/GEOS.framework/Versions/3/unix/lib -lgeos
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64
-I/Library/Frameworks/GEOS.framework/Versions/3/unix/include
-I/usr/local/include
-I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/sp/include"
-fPIC -g -O2 -c init.c -o init.o
In file included from init.c:1:
/Library/Frameworks/R.framework/Resources/include/R.h:28:20: error: stdlib.h:
No such file or directory
/Library/Frameworks/R.framework/Resources/include/R.h:29:73: error: stdio.h: No
such file or directory
In file included from /Library/Frameworks/R.framework/Resources/include/R.h:30,
from init.c:1:
/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h:15:25:
error: limits.h: No such file or directory
In file included from init.c:1:
/Library/Frameworks/R.framework/Resources/include/R.h:31:18: error: math.h: No
such file or directory
In file included from /Library/Frameworks/R.framework/Resources/include/R.h:44,
from init.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:24:39: error:
string.h: No such file or directory
In file included from init.c:2:
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:801: error:
expected declaration specifiers or ‘...’ before ‘FILE’
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:804: error:
expected declaration specifiers or ‘...’ before ‘FILE’
make: *** [init.o] Error 1
ERROR: compilation failed for package ‘rgeos’
* removing
‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/rgeos’
Warning message:
In install.packages(c("/Users/benmadin/Desktop/rgeos_0.2-3.tar.gz"), :
installation of package ‘/Users/benmadin/Desktop/rgeos_0.2-3.tar.gz’ had
non-zero exit status
Sys.getenv()
__CF_USER_TEXT_ENCODING
"0x1F5:0:15"
Apple_PubSub_Socket_Render
"/tmp/launch-zsxAK5/Render"
Apple_Ubiquity_Message
"/tmp/launch-7y6sZQ/Apple_Ubiquity_Message"
COMMAND_MODE
"unix2003"
DISPLAY
"/tmp/launch-kge8iE/org.x:0"
EDITOR
"vi"
HOME
"/Users/benmadin"
LANG
"en_AU.UTF-8"
LN_S
"ln -s"
LOGNAME
"benmadin"
MAKE
"make"
PAGER
"/usr/bin/less"
PATH
"/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin"
R_ARCH
"/x86_64"
R_BROWSER
"/usr/bin/open"
R_BZIPCMD
"/usr/bin/bzip2"
R_DOC_DIR
"/Library/Frameworks/R.framework/Resources/doc"
R_GUI_APP_REVISION
"6086"
R_GUI_APP_VERSION
"1.44"
R_GZIPCMD
"/usr/bin/gzip"
R_HOME
"/Library/Frameworks/R.framework/Resources"
R_INCLUDE_DIR
"/Library/Frameworks/R.framework/Resources/include"
R_LIBS_SITE
""
R_LIBS_USER
"~/Library/R/2.14/library"
R_PAPERSIZE
"a4"
R_PDFVIEWER
"/usr/bin/open"
R_PLATFORM
"x86_64-apple-darwin9.8.0"
R_PRINTCMD
"lpr"
R_QPDF
"/Library/Frameworks/R.framework/Resources/bin/qpdf"
R_RD4DVI
"ae"
R_RD4PDF
"times,inconsolata,hyper"
R_SESSION_TMPDIR
"/var/folders/sh/gwpnxgts1m9f3km36qr5wn600000gn/T//RtmpYZESBS"
R_SHARE_DIR
"/Library/Frameworks/R.framework/Resources/share"
R_SYSTEM_ABI
"osx,gcc,gxx,gfortran,?"
R_TEXI2DVICMD
"/usr/bin/texi2dvi"
R_UNZIPCMD
"/usr/bin/unzip"
R_ZIPCMD
"/usr/bin/zip"
SED
"/usr/bin/sed"
SHELL
"/bin/bash"
SSH_AUTH_SOCK
"/tmp/launch-nTCbsk/Listeners"
TAR
"/usr/bin/gnutar"
TMPDIR
"/var/folders/sh/gwpnxgts1m9f3km36qr5wn600000gn/T/"
USER
"benmadin"
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