Sorry of sending this again. I forgot to say that I am using R 3.0.2 on OSX 10.9
I tried several packages including MASS, mvtnorm,... However, this should be related to https://bugs.launchpad.net/raspbian/+bug/1007014 PS: I have edited /Library/Frameworks/R.framework/Versions/3.0/Resources/etc/Makeconf for CC and fortran compilers. install.packages("MASS", type="source") trying URL 'http://cran.us.r-project.org/src/contrib/MASS_7.3-29.tar.gz' Content type 'application/x-gzip' length 485067 bytes (473 Kb) opened URL ================================================== downloaded 473 Kb * installing *source* package ‘MASS’ ... ** package ‘MASS’ successfully unpacked and MD5 sums checked ** libs gcc-4.7 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c MASS.c -o MASS.o gcc-4.7 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c lqs.c -o lqs.o gcc-4.7 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o MASS.so MASS.o lqs.o SHLIB_LIBADD = -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation gcc-4.7: error: SHLIB_LIBADD: No such file or directory gcc-4.7: error: =: No such file or directory make: *** [MASS.so] Error 1 ERROR: compilation failed for package ‘MASS’ * removing ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/MASS’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/MASS’ The downloaded source packages are in ‘/private/var/folders/w9/7w10svxj5093z4831n7m27w00000gp/T/RtmpJ22Kbt/downloaded_packages’ Warning message: In install.packages("MASS", type = "source") : installation of package ‘MASS’ had non-zero exit status install.packages("mvtnorm", type="source") trying URL 'http://cran.us.r-project.org/src/contrib/mvtnorm_0.9-9996.tar.gz' Content type 'application/x-gzip' length 140034 bytes (136 Kb) opened URL ================================================== downloaded 136 Kb * installing *source* package ‘mvtnorm’ ... ** package ‘mvtnorm’ successfully unpacked and MD5 sums checked ** libs gcc-4.7 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c miwa.c -o miwa.o gfortran -arch x86_64 -fPIC -g -O2 -c mvt.f -o mvt.o gcc-4.7 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c randomF77.c -o randomF77.o gfortran -arch x86_64 -fPIC -g -O2 -c tvpack.f -o tvpack.o gcc-4.7 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c tvpackAux.c -o tvpackAux.o gcc-4.7 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o mvtnorm.so miwa.o mvt.o randomF77.o tvpack.o tvpackAux.o SHLIB_LIBADD = -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation gcc-4.7: error: SHLIB_LIBADD: No such file or directory gcc-4.7: error: =: No such file or directory make: *** [mvtnorm.so] Error 1 ERROR: compilation failed for package ‘mvtnorm’ * removing ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/mvtnorm’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/mvtnorm’ The downloaded source packages are in ‘/private/var/folders/w9/7w10svxj5093z4831n7m27w00000gp/T/RtmpJ22Kbt/downloaded_packages’ Warning message: In install.packages("mvtnorm", type = "source") : installation of package ‘mvtnorm’ had non-zero exit status _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
