----- Original Message ----- > From: "THIOULOUSE JEAN" <jean.thioulo...@univ-lyon1.fr> > To: "Dan Tenenbaum" <dtene...@fredhutch.org> > Cc: "r-sig-mac" <r-sig-mac@r-project.org> > Sent: Friday, July 10, 2015 9:53:18 PM > Subject: Re: [R-SIG-Mac] loading tkrplot causes a segfault > > > Re-install X11 XQuartz (I think that this is in the FAQ). >
Reinstalling XQuartz (and rebooting) had no effect. Any other ideas? Thanks, Dan > Jean > > > > Le 11 juil. 2015 à 00:54, Dan Tenenbaum <dtene...@fredhutch.org> a > > écrit : > > > > Hi, > > > > loading the tkrplot package (version 0.0-23) causes a segfault. > > This only seems to happen on Mavericks, not Snow Leopard, Linux, > > or Windows. > > > >> library(tkrplot) > > Loading required package: tcltk > > > > *** caught segfault *** > > address 0x998, cause 'memory not mapped' > > > > Traceback: > > 1: structure(.External(.C_dotTclObjv, objv), class = "tclObj") > > 2: .Tcl.objv(.Tcl.args.objv(...)) > > 3: tcl("load", file, "Rplot") > > 4: doTryCatch(return(expr), name, parentenv, handler) > > 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) > > 6: tryCatchList(expr, classes, parentenv, handlers) > > 7: tryCatch(tcl("load", file, "Rplot"), error = function(e) > > warning("loading Rplot failed", call. = FALSE)) > > 8: fun(libname, pkgname) > > 9: doTryCatch(return(expr), name, parentenv, handler) > > 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) > > 11: tryCatchList(expr, classes, parentenv, handlers) > > 12: tryCatch(fun(libname, pkgname), error = identity) > > 13: runHook(".onLoad", env, package.lib, package) > > 14: loadNamespace(package, c(which.lib.loc, lib.loc)) > > 15: doTryCatch(return(expr), name, parentenv, handler) > > 16: tryCatchOne(expr, names, parentenv, handlers[[1L]]) > > 17: tryCatchList(expr, classes, parentenv, handlers) > > 18: tryCatch(expr, error = function(e) { call <- > > conditionCall(e) if (!is.null(call)) { if > > (identical(call[[1L]], quote(doTryCatch))) call <- > > sys.call(-4L) dcall <- deparse(call)[1L] prefix <- > > paste("Error in", dcall, ": ") LONG <- 75L msg <- > > conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] > > w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = > > "w") if (is.na(w)) w <- 14L + nchar(dcall, type > > = "b") + nchar(sm[1L], type = "b") if (w > > > LONG) prefix <- paste0(prefix, "\n ") } else > > prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), > > "\n") .Internal(seterrmessage(msg[1L])) if (!silent && > > identical(getOption("show.error.messages"), TRUE)) { > > cat(msg, file = stderr()) > > .Internal(printDeferredWarnings()) } > > invisible(structure(msg, class = "try-error", condition = e))}) > > 19: try({ ns <- loadNamespace(package, c(which.lib.loc, > > lib.loc)) env <- attachNamespace(ns, pos = pos, deps)}) > > 20: library(tkrplot) > > > > Possible actions: > > 1: abort (with core dump, if enabled) > > 2: normal R exit > > 3: exit R without saving workspace > > 4: exit R saving workspace > > > > > > > > My sessionInfo() is: > > > >> sessionInfo() > > R version 3.2.1 (2015-06-18) > > Platform: x86_64-apple-darwin13.4.0 (64-bit) > > Running under: OS X 10.9.5 (Mavericks) > > > > locale: > > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods > > base > > > > > > Any ideas? > > > > Thanks, > > Dan > > > > _______________________________________________ > > R-SIG-Mac mailing list > > R-SIG-Mac@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac