Dear experts... I try to install the lastest version of RNetCDF
(1.8-1.tar.gz) on MacosX (El Capitan) but without success.
I send you the precise procedure I have used and some tests:
1/ I have installed MacPort as described here:
https://guide.macports.org
And it seems to be ok:
Marc-Girondot-MBA:~ marc$ port version
Version: 2.3.4
2/ I install the ports for udunits, udunits2, hdf5 and netcdf:
sudo port install udunits
sudo port install udunits
sudo port install hdf5
sudo port install netcdf
They seem to be well installed, for example (other ports are ok also):
Marc-Girondot-MBA:~ marc$ port installed hdf5
The following ports are currently installed:
hdf5 @1.8.15-patch1_0+cxx
hdf5 @1.8.16_1+cxx+hl (active)
3/ I modify .profile adding the lines:
export LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH
export DYLD_LIBRARY_PATH=/opt/local/lib:$DYLD_LIBRARY_PATH
export PATH="/opt/local/bin:/opt/local/sbin:$PATH"
4/ I verify that nc-config gave expected results:
Marc-Girondot-MBA:lib marc$ nc-config --libs
-L/opt/local/lib -lnetcdf
Marc-Girondot-MBA:lib marc$ nc-config --includedir
/opt/local/include
5/ I run the command to install the package (it is loaded on the desktop):
Marc-Girondot-MBA:~ marc$ R CMD INSTALL $HOME/desktop/RNetCDF_1.8-1.tar.gz
And it failed at this command:
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\"
-DPACKAGE_VERSION=\"1.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 1.8-1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1
-DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1
-DHAVE_UDUNITS2_UDUNITS_H=1 -DHAVE_LIBUDUNITS2=1 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RNetCDF.c -o RNetCDF.o
RNetCDF.c:75:12: fatal error: 'udunits2/udunits.h' file not found
#include <udunits2/udunits.h>
What surprised me is that I don't see -l/opt/local/lib in the list of
locations as I expected because udunits and udunits2 are there.
As someone being able to install this package ?
Sincerely,
Marc
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