Hi Ivan, Can you be more explicit about what it means to you to "enable chunks" or "properly use chunks"? Then developers will understand what you’re looking for.
cheers, Mollie ------------------------ Mollie Brooks, PhD Postdoctoral Researcher, Population Ecology Research Group Department of Evolutionary Biology & Environmental Studies, University of Zürich http://www.popecol.org/team/mollie-brooks/ > On 12Apr 2016, at 15:53, Ivan Calandra <ivan.calan...@univ-reims.fr> wrote: > > Thank you Mollie and all, > > So it looks like there's no way to properly use chunks within the Mac R GUI. > I will have to decide whether I completely switch to RStudio, or develop in > the R GUI and then run in RStudio. > > Still, until now I was a great fan of the R GUI on Mac so I'm a bit > frustrated. It would be great if this feature were integrated to the R GUI > some day! Alternatively, a better GUI for RStudio allowing for multiple > screens would be fine too (but that's for another list!). > > Bests, > Ivan > > -- > Ivan Calandra, PhD > University of Reims Champagne-Ardenne > GEGENAA - EA 3795 > CREA - 2 esplanade Roland Garros > 51100 Reims, France > +33(0)3 26 77 36 89 > ivan.calan...@univ-reims.fr <mailto:ivan.calan...@univ-reims.fr> > -- > https://www.researchgate.net/profile/Ivan_Calandra > <https://www.researchgate.net/profile/Ivan_Calandra> > https://publons.com/author/705639/ <https://publons.com/author/705639/> > > Le 12/04/2016 15:05, Mollie Brooks a écrit : >> Hi Ivan, >> >> Using the R GUI and the built-in editor, you should be able to format your >> document in the standard Rmarkdown or knitr way and save it with the >> appropriate extension (Rmd or Rnw), but only run lines within chunks in the >> console (using command + enter in the normal way). You can make sure all the >> chunks are working in that way. Then to format the whole document you can >> use a command in the Terminal as described in the links Tom sent or reopen >> the document in Rstudio. >> >> Somehow my R GUI can’t find the right pieces to make the pdf, so I have to >> use the Terminal. render("EstObsErr.Rmd") produces the error >> /usr/local/bin/pandoc EstObsErr.utf8.md --to latex --from >> markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures >> --output EstObsErr.pdf --template >> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/rmarkdown/rmd/latex/default-1.14.tex >> --highlight-style tango --latex-engine pdflatex --variable >> 'geometry:margin=1in' >> pandoc: pdflatex not found. pdflatex is needed for pdf output. >> Error: pandoc document conversion failed with error 41 >> >> cheers, >> Mollie >> >> ------------------------ >> Mollie Brooks, PhD >> Postdoctoral Researcher, Population Ecology Research Group >> Department of Evolutionary Biology & Environmental Studies, University of >> Zürich >> http://www.popecol.org/team/mollie-brooks/ >> >>> On 12Apr 2016, at 12:57, Ivan Calandra <ivan.calan...@univ-reims.fr >>> <mailto:ivan.calan...@univ-reims.fr> <mailto:ivan.calan...@univ-reims.fr >>> <mailto:ivan.calan...@univ-reims.fr>>> wrote: >>> >>> Thank you for your answer. >>> >>> I don't usually use the Terminal, so I'm not sure how to do it. >>> But do you mean to start it from the Terminal and then use the R GUI or do >>> everything in the Terminal? In the latter case, I would prefer using >>> RStudio... My question was about using the R GUI Editor rather than RStudio. >>> >>> Ivan >>> >>> -- >>> Ivan Calandra, PhD >>> University of Reims Champagne-Ardenne >>> GEGENAA - EA 3795 >>> CREA - 2 esplanade Roland Garros >>> 51100 Reims, France >>> +33(0)3 26 77 36 89 >>> ivan.calan...@univ-reims.fr <mailto:ivan.calan...@univ-reims.fr> >>> <mailto:ivan.calan...@univ-reims.fr <mailto:ivan.calan...@univ-reims.fr>> >>> -- >>> https://www.researchgate.net/profile/Ivan_Calandra >>> https://publons.com/author/705639/ >>> >>> Le 12/04/2016 11:41, Tom Hopper a écrit : >>>> Ivan, >>>> >>>> You need to run knitr manually from the terminal (RStudio automates this >>>> with the “knit” button). See >>>> >>>> http://joshldavis.com/2014/04/12/beginners-tutorial-for-knitr/ >>>> http://kbroman.org/knitr_knutshell/pages/Rmarkdown.html >>>> >>>> for short tutorials on using knitr from the terminal. >>>> >>>> Regards, >>>> >>>> Tom >>>> >>>>> On 201604 12, at 05:15, Ivan Calandra <ivan.calan...@univ-reims.fr >>>>> <mailto:ivan.calan...@univ-reims.fr>> wrote: >>>>> >>>>> Dear Mac useRs, >>>>> >>>>> A colleague of mine have introduced me to rmarkdown and knitr to produce >>>>> nice reports. The other interesting thing here is to have so-called >>>>> chunks of code, which I find very practical to organize scripts. >>>>> >>>>> I have found that it works well within RStudio. But is there a way to >>>>> enable chunks within the R GUI (and its great editor)? >>>>> What I don't like with RStudio (except that I need to install still >>>>> another software, and place is limited on the 256GB SSD of my MacBook >>>>> Air) is that it is not able to work on multiple screens. >>>>> >>>>> Thank you in advance for your help. >>>>> Ivan >>>>> >>>>> -- >>>>> Ivan Calandra, PhD >>>>> University of Reims Champagne-Ardenne >>>>> GEGENAA - EA 3795 >>>>> CREA - 2 esplanade Roland Garros >>>>> 51100 Reims, France >>>>> +33(0)3 26 77 36 89 >>>>> ivan.calan...@univ-reims.fr <mailto:ivan.calan...@univ-reims.fr> >>>>> -- >>>>> https://www.researchgate.net/profile/Ivan_Calandra >>>>> https://publons.com/author/705639/ >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org <mailto:R-SIG-Mac@r-project.org> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > <https://stat.ethz.ch/mailman/listinfo/r-sig-mac> [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
