> On May 9, 2016, at 1:19 PM, David Winsemius <dwinsem...@comcast.net> wrote: > > >> On May 9, 2016, at 1:04 PM, Simon Urbanek <simon.urba...@r-project.org> >> wrote: >> >> >> On May 9, 2016, at 2:50 PM, Mick Jordan <mick.jor...@oracle.com> wrote: >> >>> What third party installer is used for the standard Mac OS X build? Looking >>> at the following I can't figure out where lzma is coming from. I am using >>> MacPorts (on El Cap) which puts lzma in /opt/local/include. >>> >> >> >> No 3rd party, only static libs used on CRAN, i.e., what is in >> http://r.research.att.com/libs/ > > It wasn't obvious where lzma was being derived in any of those sources, so I > made my best efforts and decided it was probably from xz-5.2.1.tar.bz2 > > Was my searching correct? >
As a followup can anyone suggest how I should address (or whether I should even worry about) the error reported when I follow the installation advice for that package on that page: $ curl -O http://r.research.att.com/libs/xz-5.2.1-darwin.13-x86_64.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 617k 100 617k 0 0 352k 0 0:00:01 0:00:01 --:--:-- 352k david-winsemiuss-mac-pro:~ davidwinsemius$ sudo tar fvxz xz-5.2.1-darwin.13-x86_64.tar.gz -C / Password: x usr/: Can't set user=0/group=0 for usrCan't update time for usr x usr/local/ x usr/local/bin/ x usr/local/include/ x usr/local/lib/ x usr/local/share/ x usr/local/share/doc/ x usr/local/share/man/ x usr/local/share/man/man1/ x usr/local/share/man/man1/lzcat.1 x usr/local/share/man/man1/lzcmp.1 x usr/local/share/man/man1/lzdiff.1 x usr/local/share/man/man1/lzegrep.1 x usr/local/share/man/man1/lzfgrep.1 x usr/local/share/man/man1/lzgrep.1 x usr/local/share/man/man1/lzless.1 x usr/local/share/man/man1/lzma.1 x usr/local/share/man/man1/lzmadec.1 x usr/local/share/man/man1/lzmainfo.1 x usr/local/share/man/man1/lzmore.1 x usr/local/share/man/man1/unlzma.1 x usr/local/share/man/man1/unxz.1 x usr/local/share/man/man1/xz.1 x usr/local/share/man/man1/xzcat.1 x usr/local/share/man/man1/xzcmp.1 x usr/local/share/man/man1/xzdec.1 x usr/local/share/man/man1/xzdiff.1 x usr/local/share/man/man1/xzegrep.1 x usr/local/share/man/man1/xzfgrep.1 x usr/local/share/man/man1/xzgrep.1 x usr/local/share/man/man1/xzless.1 x usr/local/share/man/man1/xzmore.1 x usr/local/share/doc/xz/ x usr/local/share/doc/xz/AUTHORS x usr/local/share/doc/xz/COPYING x usr/local/share/doc/xz/COPYING.GPLv2 x usr/local/share/doc/xz/examples/ x usr/local/share/doc/xz/examples_old/ x usr/local/share/doc/xz/faq.txt x usr/local/share/doc/xz/history.txt x usr/local/share/doc/xz/lzma-file-format.txt x usr/local/share/doc/xz/NEWS x usr/local/share/doc/xz/README x usr/local/share/doc/xz/THANKS x usr/local/share/doc/xz/TODO x usr/local/share/doc/xz/xz-file-format.txt x usr/local/share/doc/xz/examples_old/xz_pipe_comp.c x usr/local/share/doc/xz/examples_old/xz_pipe_decomp.c x usr/local/share/doc/xz/examples/00_README.txt x usr/local/share/doc/xz/examples/01_compress_easy.c x usr/local/share/doc/xz/examples/02_decompress.c x usr/local/share/doc/xz/examples/03_compress_custom.c x usr/local/share/doc/xz/examples/04_compress_easy_mt.c x usr/local/share/doc/xz/examples/Makefile x usr/local/lib/liblzma.a x usr/local/lib/liblzma.la x usr/local/lib/pkgconfig/ x usr/local/lib/pkgconfig/liblzma.pc x usr/local/include/lzma/ x usr/local/include/lzma.h x usr/local/include/lzma/base.h x usr/local/include/lzma/bcj.h x usr/local/include/lzma/block.h x usr/local/include/lzma/check.h x usr/local/include/lzma/container.h x usr/local/include/lzma/delta.h x usr/local/include/lzma/filter.h x usr/local/include/lzma/hardware.h x usr/local/include/lzma/index.h x usr/local/include/lzma/index_hash.h x usr/local/include/lzma/lzma12.h x usr/local/include/lzma/stream_flags.h x usr/local/include/lzma/version.h x usr/local/include/lzma/vli.h x usr/local/bin/lzcat x usr/local/bin/lzcmp x usr/local/bin/lzdiff x usr/local/bin/lzegrep x usr/local/bin/lzfgrep x usr/local/bin/lzgrep x usr/local/bin/lzless x usr/local/bin/lzma x usr/local/bin/lzmadec x usr/local/bin/lzmainfo x usr/local/bin/lzmore x usr/local/bin/unlzma x usr/local/bin/unxz x usr/local/bin/xz x usr/local/bin/xzcat x usr/local/bin/xzcmp x usr/local/bin/xzdec x usr/local/bin/xzdiff x usr/local/bin/xzegrep x usr/local/bin/xzfgrep x usr/local/bin/xzgrep x usr/local/bin/xzless x usr/local/bin/xzmore tar: Error exit delayed from previous errors. System Version: OS X 10.11.4 (15E65) Kernel Version: Darwin 15.4.0 Model Name: Mac Pro Model Identifier: MacPro3,1 Processor Name: Quad-Core Intel Xeon Processor Speed: 2.8 GHz Number of Processors: 2 Total Number of Cores: 8 L2 Cache (per Processor): 12 MB Memory: 32 GB (This is probably not really necessary from a current R session;) R version 3.3.0 RC (2016-05-01 r70572) -- "Supposedly Educational" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin13.4.0 (64-bit) --snipped a bunch of pkg loading information [R.app GUI 1.68 (7201) x86_64-apple-darwin13.4.0] -- David. > -- > David. > >> >> Cheers, >> Simon >> >> >>> Mick Jordan >>> >>> $ head /Library/Frameworks/R.framework/Resources/etc/Makeconf >>> # etc/Makeconf. Generated from Makeconf.in by configure. >>> # >>> # ${R_HOME}/etc/Makeconf >>> # >>> # R was configured using the following call >>> # (not including env. vars and site configuration) >>> # configure 'CC=clang' 'CXX=clang++' 'OBJC=clang' 'F77=gfortran-4.8' >>> 'FC=gfortran-4.8' 'CFLAGS=-Wall -mtune=core2 -g -O2' 'CXXFLAGS=-Wall >>> -mtune=core2 -g -O2' 'OBJCFLAGS=-Wall -mtune=core2 -g -O2' 'FCFLAGS=-Wall >>> -g -O2' 'F77FLAGS=-Wall -g -O2' '--with-system-zlib' >>> '--enable-memory-profiling' 'CPPFLAGS=-I/usr/local/include >>> -I/usr/local/include/freetype2 -I/opt/X11/include' >>> '--x-libraries=/opt/X11/lib' '--x-includes=/usr/local/include' >>> '--enable-R-framework' >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > David Winsemius > Alameda, CA, USA > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac David Winsemius Alameda, CA, USA _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac