Of course -- there were forgotten settings in $HOME/.R/Makevars -- I should have inferred that it was a private matter. Apologies.
On Tue, Nov 21, 2017 at 9:05 AM, Simon Urbanek <simon.urba...@r-project.org> wrote: > Vince, > > I'm pretty sure you are using custom settings, because the binary uses > clang: > > $ R CMD config CC > clang > $ grep -r /opt/local/bin/ /Library/Frameworks/R.framework/ > $ > > We don't have /opt/local on the build machine so it must be something > configured in your system. > Please make sure you don't use custom package managers on you PATH since > you'd be picking up non-CRAN R. > > Cheers, > Simon > > > > > On Nov 21, 2017, at 8:26 AM, Vincent Carey <st...@channing.harvard.edu> > wrote: > > > > On Tue, Nov 21, 2017 at 3:34 AM, Prof Brian Ripley < > rip...@stats.ox.ac.uk> > > wrote: > > > >> On 21/11/2017 04:03, Vincent Carey wrote: > >> > >>> %vjcair> R CMD config CC > >>> > >>> /opt/local/bin/gcc-mp-5 > >>> > >>> > >>> I don't seem to be able to override this using environment variable CC. > >>> And > >>> > >> > >> When all else fails, read the manual (but, see the posting guide, before > >> posting here)! This is covered in, e.g., > >> > >> https://cran.r-project.org/doc/manuals/r-release/R-admin.htm > >> l#macOS-packages > >> > >> https://cran.r-project.org/doc/manuals/r-release/R-admin.htm > >> l#Customizing-package-compilation > >> > >> > > Yes, section 6.3.3. gives the solution. > > > > > >> > >>> I cannot see how to install gcc-mp-5. This version of R was obtained > from > >>> > >>> r.research.att.com, R-3.4-branch-el-capitan.pkg. > >>> > >>> > >>> I would have expected clang to be the c compiler for this build. I > will > >>> > >> > >> It was for the released version of 3.4.2. Problems with off-CRAN builds > >> are best addressed to the builder, here Simon Urbanek. But that is a > >> month-old snapshot build ... I don't understand why you did not simply > >> update it, and I see 'clang' in the current snapshot. > >> > > > > Without alternate settings in the platform-specific Makevars, the most > > recent binary gives the value of "R CMD config CC" noted in the original > > posting. > > > > Thank you for your assistance. > > > > > >> > >> > >> > >>> appreciate any suggestions. As it stands, any installation from source > >>> requiring > >>> > >>> compilation throws errors like > >>> > >>> /bin/sh: /opt/local/bin/g++-mp-5: No such file or directory > >>> > >>> > >>> R version 3.4.2 Patched (2017-10-20 r73567) -- "Short Summer" > >>> > >>> Copyright (C) 2017 The R Foundation for Statistical Computing > >>> > >>> Platform: x86_64-apple-darwin15.6.0 (64-bit) > >>> > >>> > >>> R is free software and comes with ABSOLUTELY NO WARRANTY. > >>> > >>> You are welcome to redistribute it under certain conditions. > >>> > >>> Type 'license()' or 'licence()' for distribution details. > >>> > >>> > >>> Natural language support but running in an English locale > >>> > >>> > >>> R is a collaborative project with many contributors. > >>> > >>> Type 'contributors()' for more information and > >>> > >>> 'citation()' on how to cite R or R packages in publications. > >>> > >>> > >>> Type 'demo()' for some demos, 'help()' for on-line help, or > >>> > >>> 'help.start()' for an HTML browser interface to help. > >>> > >>> Type 'q()' to quit R. > >>> > >>> > >>> sessionInfo() > >>>> > >>> > >>> R version 3.4.2 Patched (2017-10-20 r73567) > >>> > >>> Platform: x86_64-apple-darwin15.6.0 (64-bit) > >>> > >>> Running under: macOS Sierra 10.12.6 > >>> > >>> > >>> Matrix products: default > >>> > >>> BLAS: > >>> /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/ > >>> libRblas.0.dylib > >>> > >>> LAPACK: /Library/Frameworks/R.framework/Versions/3.4 > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> _______________________________________________ > >>> R-SIG-Mac mailing list > >>> R-SIG-Mac@r-project.org > >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>> > >>> > >> > >> -- > >> Brian D. Ripley, rip...@stats.ox.ac.uk > >> Emeritus Professor of Applied Statistics, University of Oxford > >> > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-SIG-Mac mailing list > > R-SIG-Mac@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > > > [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac