Hi, sf (and many other spatial packages) depend upon gdal (http://www.gdal.org/ <http://www.gdal.org/>) being installed on your platform. Your message says it can't find the gdal-config utility, "checking for gdal-config... no". You can install it following these instructions...
https://trac.osgeo.org/gdal/wiki/DownloadingGdalBinaries <https://trac.osgeo.org/gdal/wiki/DownloadingGdalBinaries> I'm not sure about the other packages you list. Cheers, Ben > On Jan 15, 2018, at 11:25 AM, Manuel Spínola <mspinol...@gmail.com> wrote: > > I am still having problems updating some packages, for example, > > sf > Hmisc > rms > mgcv > RcmdrMisc > > Same messages that I showed in my first email. > > Manuel > > > 2018-01-11 12:17 GMT-06:00 Simon Urbanek <simon.urba...@r-project.org>: > >> Manuel, >> >> the archiving on CRAN has changed recently which broke the updates so >> recently the update for macOS packages have been suspended. Hence some most >> recent binaries is not available yet - it should be up by tomorrow. >> >> Cheers, >> Simon >> >> >> >>> On Jan 11, 2018, at 12:26 PM, Manuel Spínola <mspinol...@gmail.com> >> wrote: >>> >>> Dear list members, >>> >>> When trying updating some packages in MacOS High Sierra 10.13 (R 3.4.2) >>> some packages, as "sf", fails: >>> >>>> install.packages("sf") >>> >>> There is a binary version available but the source version is later: >>> binary source needs_compilation >>> sf 0.5-5 0.6-0 TRUE >>> >>> Do you want to install from sources the package which needs compilation? >>> y/n: y >>> >>> installing the source package ‘sf’ >>> >>> trying URL 'https://cran.rstudio.com/src/contrib/sf_0.6-0.tar.gz' >>> Content type 'application/x-gzip' length 7399611 bytes (7.1 MB) >>> ================================================== >>> downloaded 7.1 MB >>> >>> Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) : >>> unknown timezone 'default/America/Costa_Rica' >>> * installing *source* package ‘sf’ ... >>> ** package ‘sf’ successfully unpacked and MD5 sums checked >>> configure: CC: clang >>> configure: CXX: clang++ >>> checking for gdal-config... no >>> no >>> configure: error: gdal-config not found or not executable. >>> ERROR: configuration failed for package ‘sf’ >>> * removing >>> ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf’ >>> * restoring previous >>> ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf’ >>> Warning in install.packages : >>> installation of package ‘sf’ had non-zero exit status >>> >>> The downloaded source packages are in >>> ‘/private/var/folders/gf/vwlbzml90wv7cs2r4v00wg_m0000gn/T/RtmpbmvcCh/ >> downloaded_packages’ >>>> >>> >>> >>> Any solution to this problem? >>> >>> Manuel >>> >>> -- >>> *Manuel Spínola, Ph.D.* >>> Instituto Internacional en Conservación y Manejo de Vida Silvestre >>> Universidad Nacional >>> Apartado 1350-3000 >>> Heredia >>> COSTA RICA >>> mspin...@una.cr <mspin...@una.ac.cr> >>> mspinol...@gmail.com >>> Teléfono: (506) 8706 - 4662 >>> Personal website: Lobito de río <https://sites.google.com/ >> site/lobitoderio/> >>> Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> > > > -- > *Manuel Spínola, Ph.D.* > Instituto Internacional en Conservación y Manejo de Vida Silvestre > Universidad Nacional > Apartado 1350-3000 > Heredia > COSTA RICA > mspin...@una.cr <mspin...@una.ac.cr> > mspinol...@gmail.com > Teléfono: (506) 8706 - 4662 > Personal website: Lobito de río <https://sites.google.com/site/lobitoderio/> > Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/> > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac Ben Tupper Bigelow Laboratory for Ocean Sciences 60 Bigelow Drive, P.O. Box 380 East Boothbay, Maine 04544 http://www.bigelow.org Ecocast Reports: http://seascapemodeling.org/ecocast.html Tick Reports: https://report.bigelow.org/tick/ Jellyfish Reports: https://jellyfish.bigelow.org/jellyfish/ [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac