I did not run any of the Catalina betas and have no problem with Catalina/XQuartz.
Jean —- Jean THIOULOUSE - orcid.org/0000-0001-7664-0598 http://lbbe.univ-lyon1.fr/-Thioulouse-Jean-.html https://www.springer.com/fr/book/9781493988488 > Le 9 oct. 2019 à 15:20, Kasper Daniel Hansen <kasperdanielhan...@gmail.com> a > écrit : > > Bob, > > You ran the betas. On issues like this, that could be a big difference. So > Im not sure it is yet an issue that could be user dependent. > > Best, > Kasper > > On Tue, Oct 8, 2019 at 10:00 PM Bob Rudis <b...@rud.is> wrote: > >> I've been running Catalina since the first beta and upgraded to GM the day >> of release. Apart from having to stick R things into Full Disk Access I've >> had no issues with R nor XQuartz. >> >> I read through the links provided and, while I do have said symlink in the >> relocated items folder Apple creates (this is new behavior for the GM), it >> gets re-created fine for me & XQuartz works fine (and the minor pkg deps I >> have installed that use it also work fine. >> >> This would appear to be a YMMV situation. >> >> -Bob >> >>> On Oct 8, 2019, at 4:19 PM, Luis Puerto <luiss.pue...@gmail.com> wrote: >>> >>> Thanks a lot for the heads up! >>> >>> Cheers! >>> Luis >>> >>>> On 8 Oct 2019, at 22:49, Marc Schwartz via R-SIG-Mac < >> r-sig-mac@r-project.org> wrote: >>>> >>>> Hi All, >>>> >>>> Perhaps I missed something relevant along the way someplace, but I ran >> the upgrade to Catalina (10.15) last night. I wanted to give folks a heads >> up on an issue that you may face, especially if you have XQuartz installed >> alongside R. >>>> >>>> One of the sequelae of the upgrade is that some files may get relocated >> during the upgrade, likely in part due to the macOS SIP. >>>> >>>> In my case, this involved the symlink for XQuartz, 'usr/X11R6', which >> gets placed into a "Relocated Items" folder on the Desktop. That folder, >> which is actually an alias to /Users/Shared, contains a folder tree with: >> Security/usr/X11R6. Naively, after seeing this, I elected to move the >> entire folder to the Trash. >>>> >>>> That led me into a cycle of trying to figure out how to then delete >> that folder tree from the Trash, as I would get various OS errors in the >> course of doing so. >>>> >>>> That led me to some Google searches, with incremental attempts at >> solutions, but eventually landing on the following thread in the Apple >> Community forums: >>>> >>>> https://discussions.apple.com/thread/250712783 >>>> >>>> After the first review of the thread there, and before user 'faikbey' >> posted a possible solution using Recovery Mode, I filed an Issue on the >> XQuartz github repo here: >>>> >>>> https://github.com/XQuartz/XQuartz/issues/1 >>>> >>>> It would seem that, at some level, one workaround would be to uninstall >> XQuartz fully before the Catalina upgrade, but there is no uninstall >> program provided by them. There is a series of CLI commands in a github >> gist here: >>>> >>>> >> https://gist.github.com/pwnsdx/d127873e24cef159d4d603accaf37ee4#file-gistfile1-txt >>>> >>>> which appears to work, but would likely be best used prior to the >> Catalina upgrade, and then re-install XQuartz after the upgrade is complete. >>>> >>>> The solution to the problem posted by 'faikbey' in the Apple forum >> appears to work in the original scenario, albeit, as I noted in my reply in >> that thread, I needed to first mount the user volume in Recovery Mode using >> Disk Utility, before I could proceed with the additional steps of deleting >> the files from the Trash, then rebooting into normal mode. >>>> >>>> If anyone else has experienced this and knows of an alternative/better >> solution, let us know. >>>> >>>> Otherwise, let's see what the XQuartz folks might come up with on this, >> as this was not an issue with prior macOS upgrades. >>>> >>>> Regards, >>>> >>>> Marc Schwartz >>>> >>>> _______________________________________________ >>>> R-SIG-Mac mailing list >>>> R-SIG-Mac@r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > > -- > Best, > Kasper > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac