I am not getting any error with Catalina 10.15.2
> install.packages("regtools", repo = "https://cloud.r-project.org";)
also installing the dependency ‘dummies’
trying URL
'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/dummies_1.5.6.tgz'
Content type 'application/x-gzip' length 27294 bytes (26 KB)
==================================================
downloaded 26 KB
trying URL
'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/regtools_1.1.0.tgz'
Content type 'application/x-gzip' length 1596328 bytes (1.5 MB)
==================================================
downloaded 1.5 MB
The downloaded binary packages are in
/var/folders/y3/5z1skj6s5tq0pktmsq6x80v80000gn/T//RtmpMKeXpC/downloaded_packages
System Software Overview:
System Version: macOS 10.15.2 (19C57)
Kernel Version: Darwin 19.2.0
Boot Volume: Macintosh HD
Boot Mode: Normal
Computer Name: prefect
User Name: R. Mark Sharp (msharp)
Secure Virtual Memory: Enabled
System Integrity Protection: Enabled
Time since boot: 3 days 19:36
Model Name: MacBook Pro
Model Identifier: MacBookPro11,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 157.0.0.0.0
SMC Version (system): 2.19f12
Serial Number (system): C02NN2F0G3QP
Hardware UUID: 5E2ECC0B-E7EC-5E58-97BB-2513010E6DA8
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
> On Dec 21, 2019, at 12:31 PM, bruno apolloni <apoll...@di.unimi.it> wrote:
>
> The antivirus kaspersky blocks the direct connection to the cloud repo.
> Removed antivirus -> install.packages() works.
>
> Thanks for all
>
> Bruno
>
>> Il giorno 19 dic 2019, alle ore 21:54, bruno apolloni <apoll...@di.unimi.it>
>> ha scritto:
>>
>> Maybe, dear Luis.
>>
>> All the best
>>
>> Bruno
>>
>>> Il giorno 19 dic 2019, alle ore 20:45, Luis Puerto <luiss.pue...@gmail.com>
>>> ha scritto:
>>>
>>> Bruno, I doubt Apple is going to patch anything because the problem seems
>>> to be either on your computer or on your network.
>>>
>>> It smells to me that for example your host file, or something else, has
>>> been modified, or something in your network has also change that is
>>> blocking your access to that repository for some reason.
>>>
>>> I'm also on Catalina and as the rest I can access that repo on the browser,
>>> or any other, without a trouble.
>>>
>>> Anyhow, if you really think that the problem is on Apple side, you should
>>> contact them if you really expect them to produce any fix.
>>>
>>> Best of the lucks!
>>>
>>> Cheers!
>>> Luis
>>>
>>>> On 19 Dec 2019, at 18:50, bruno apolloni <apoll...@di.unimi.it
>>>> <mailto:apoll...@di.unimi.it>> wrote:
>>>>
>>>> Ok, I surrend!
>>>>
>>>> Waiting for necessary patches by Apple, for the moment I’m comfortably
>>>> running R on a Windows system.
>>>>
>>>> Thanks for all.
>>>>
>>>> Bruno
>>>>
>>>>> Il giorno 18 dic 2019, alle ore 16:46, Bob Rudis <b...@rud.is
>>>>> <mailto:b...@rud.is>> ha scritto:
>>>>>
>>>>> Something else changed on your system as Catalina does no domain/IP/URL
>>>>> blocking without user-intervention and those repo URLs work fine on all
>>>>> my (many) Catalina systems.
>>>>>
>>>>> What else changed after you did the Catalina install?
>>>>>
>>>>> There's a great deal wrong with Catalina, this is not one of those things.
>>>>>
>>>>>> On Dec 18, 2019, at 10:43, peter dalgaard <pda...@gmail.com
>>>>>> <mailto:pda...@gmail.com>> wrote:
>>>>>>
>>>>>> Hmm, my best guess is that file downloads are failing somehow. It's not
>>>>>> like, e.g.,
>>>>>>
>>>>>> https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz
>>>>>>
>>>>>> <https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz>
>>>>>>
>>>>>> is not on the website.
>>>>>>
>>>>>> Time to get scientific: Try putting a debug(download.file) and/or
>>>>>> debug(available.packages), retry the install (or maybe just do
>>>>>> available.packages(repos=....)), and single-step through the call to see
>>>>>> where it goes wrong. One possibility is that you don't have write
>>>>>> permission for the directory that it wants to download into, so figure
>>>>>> out what the exact target is.
>>>>>>
>>>>>> -pd
>>>>>>
>>>>>>
>>>>>>> On 18 Dec 2019, at 16:05 , bruno apolloni <apoll...@di.unimi.it> wrote:
>>>>>>>
>>>>>>> Thanks for the clarification. I did it, but with the same result
>>>>>>>
>>>>>>>> install.packages("regtools", repo = "https://cloud.r-project.org";)
>>>>>>> Installing package into ‘/Users/blapo_nuovo/Library/R/3.6/library’
>>>>>>> Warning: unable to access index for repository
>>>>>>> https://cloud.r-project.org/src/contrib:
>>>>>>> Warning: unable to access index for repository
>>>>>>> https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
>>>>>>> Warning message:
>>>>>>> package ‘regtools’ is not available (for R version 3.6.2)
>>>>>>>
>>>>>>> Cave Catalina! Me too have no problem with el-captain.
>>>>>>>
>>>>>>> Bruno
>>>>>>>
>>>>>>>> Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch
>>>>>>>> <murdoch.dun...@gmail.com> ha scritto:
>>>>>>>>
>>>>>>>> On 18/12/2019 8:43 a.m., bruno apolloni wrote:
>>>>>>>>> Do you mean that it does not work locally on my computer, but only in
>>>>>>>>> the cloud?
>>>>>>>>
>>>>>>>> I think he meant
>>>>>>>>
>>>>>>>> install.packages("regtools", repo = "https://cloud.r-project.org";)
>>>>>>>>
>>>>>>>> which works for me (but I'm not on Catalina, I'm still on High Sierra).
>>>>>>>>
>>>>>>>> Duncan Murdoch
>>>>>>>>
>>>>>>>>> Thanks for the collaboration
>>>>>>>>> Bruno
>>>>>>>>>> Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug
>>>>>>>>>> <rai...@krugs.de> ha scritto:
>>>>>>>>>>
>>>>>>>>>> Just works out of the box, i.e. the cloud repo.
>>>>>>>>>>
>>>>>>>>>> PS: please CC the list in - thanks
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> On 18 Dec 2019, at 14:34, bruno apolloni <apoll...@di.unimi.it
>>>>>>>>>>> <mailto:apoll...@di.unimi.it>> wrote:
>>>>>>>>>>>
>>>>>>>>>>> I tried from many repo:
>>>>>>>>>>>
>>>>>>>>>>> https://cran.r-project.org <https://cran.r-project.org/>
>>>>>>>>>>> https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
>>>>>>>>>>> https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
>>>>>>>>>>> http://cran.mirror.garr.it/mirrors/CRAN/
>>>>>>>>>>> <http://cran.mirror.garr.it/mirrors/CRAN/>
>>>>>>>>>>>
>>>>>>>>>>> always with the same answer:
>>>>>>>>>>>
>>>>>>>>>>> package ‘regtools’ is not available (for R version 3.6.2) .
>>>>>>>>>>>
>>>>>>>>>>> Which URL you refer to? The above links are opened in Safari.
>>>>>>>>>>>
>>>>>>>>>>> Thanks for your cooperation
>>>>>>>>>>>
>>>>>>>>>>> Bruno
>>>>>>>>>>>
>>>>>>>>>>>> Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug
>>>>>>>>>>>> <rai...@krugs.de <mailto:rai...@krugs.de>> ha scritto:
>>>>>>>>>>>>
>>>>>>>>>>>> Also on Catalena: I can install without problems. Try a different
>>>>>>>>>>>> repo? Can you open the URL in Safari?
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> Cheers,
>>>>>>>>>>>>
>>>>>>>>>>>> Rainer
>>>>>>>>>>>>
>>>>>>>>>>>>> On 18 Dec 2019, at 13:32, bruno apolloni <apoll...@di.unimi.it
>>>>>>>>>>>>> <mailto:apoll...@di.unimi.it>> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>> Any help after the Ken answer?
>>>>>>>>>>>>>
>>>>>>>>>>>>> Thanks a lot
>>>>>>>>>>>>> Bruno
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Inizio messaggio inoltrato:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Da: bruno apolloni <apoll...@di.unimi.it
>>>>>>>>>>>>>> <mailto:apoll...@di.unimi.it>>
>>>>>>>>>>>>>> Oggetto: Re: [R-SIG-Mac] damned Catalina
>>>>>>>>>>>>>> Data: 18 dicembre 2019 13:30:54 CET
>>>>>>>>>>>>>> A: Ken Beath <k...@kjbeath.com.au <mailto:k...@kjbeath.com.au>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Actually, in https://cran.r-project.org/bin/macosx/
>>>>>>>>>>>>>> <https://cran.r-project.org/bin/macosx/>
>>>>>>>>>>>>>> <https://cran.r-project.org/bin/macosx/
>>>>>>>>>>>>>> <https://cran.r-project.org/bin/macosx/>> I read;
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> For discussion of Mac-related topics and reporting Mac-specific
>>>>>>>>>>>>>> bugs, please use the R-SIG-Mac
>>>>>>>>>>>>>> <https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>>>>>>>> <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Did something went wrong? Should I remove the first line of my
>>>>>>>>>>>>>> mail? Actually, what I need is to run “regtools” on Cran R
>>>>>>>>>>>>>> insalled on my computer. Thanks for your unsderstanding, all the
>>>>>>>>>>>>>> best
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Bruno
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Bruno Apolloni
>>>>>>>>>>>>>> (Full Professor )
>>>>>>>>>>>>>> Dipartimento di Informatica
>>>>>>>>>>>>>> University of Milano
>>>>>>>>>>>>>> Via Comelico 39
>>>>>>>>>>>>>> 20135 Milano (Italy)
>>>>>>>>>>>>>> Tel. +39(0)2-50316284
>>>>>>>>>>>>>> Fax. +39(0)2-50316228
>>>>>>>>>>>>>> Mobile +39 333 7469878
>>>>>>>>>>>>>> e-mail: apoll...@di.unimi.it <mailto:apoll...@di.unimi.it>
>>>>>>>>>>>>>> <mailto:apoll...@di.unimi.it <mailto:apoll...@di.unimi.it>>
>>>>>>>>>>>>>> http://homes.di.unimi.it/apolloni
>>>>>>>>>>>>>> <http://homes.di.unimi.it/apolloni>
>>>>>>>>>>>>>> <http://homes.di.unimi.it/apolloni
>>>>>>>>>>>>>> <http://homes.di.unimi.it/apolloni>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Il giorno 18 dic 2019, alle ore 13:08, Ken Beath
>>>>>>>>>>>>>>> <k...@kjbeath.com.au <mailto:k...@kjbeath.com.au>
>>>>>>>>>>>>>>> <mailto:k...@kjbeath.com.au <mailto:k...@kjbeath.com.au>>> ha
>>>>>>>>>>>>>>> scritto:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Try another repository. It works fine with the main CRAN and
>>>>>>>>>>>>>>> teh RStudio repositories.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Ken
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On 18 Dec 2019, at 10:50 pm, bruno apolloni
>>>>>>>>>>>>>>>> <apoll...@di.unimi.it <mailto:apoll...@di.unimi.it>
>>>>>>>>>>>>>>>> <mailto:apoll...@di.unimi.it <mailto:apoll...@di.unimi.it>>>
>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Dear All
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> among disasters of the new operating system Catalina, this one
>>>>>>>>>>>>>>>> concerns R.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Trying to install “regtools" the answer by Crane R consolle is
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> unable to access index for repository
>>>>>>>>>>>>>>>> https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6
>>>>>>>>>>>>>>>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> The same for “devtools”. This happens on my Mac with Catalina
>>>>>>>>>>>>>>>> OS. The same installation on same Crane R but on a laptop of
>>>>>>>>>>>>>>>> colleauge of mine endowed with previous OS (el captain)
>>>>>>>>>>>>>>>> succeeds without any problem.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Any remedy to suggest?
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Thanks a lot
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Bruno
>>>>>>>>>>>>>>>> [[alternative HTML version deleted]]
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>> R-SIG-Mac mailing list
>>>>>>>>>>>>>>>> R-SIG-Mac@r-project.org <mailto:R-SIG-Mac@r-project.org>
>>>>>>>>>>>>>>>> <mailto:R-SIG-Mac@r-project.org
>>>>>>>>>>>>>>>> <mailto:R-SIG-Mac@r-project.org>>
>>>>>>>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>>>>>>>>>> <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> [[alternative HTML version deleted]]
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> R-SIG-Mac mailing list
>>>>>>>>>>>>> R-SIG-Mac@r-project.org <mailto:R-SIG-Mac@r-project.org>
>>>>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>>>>>>> <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
>>>>>>>>>>>> Biology, UCT), Dipl. Phys. (Germany)
>>>>>>>>>>>>
>>>>>>>>>>>> Orcid ID: 0000-0002-7490-0066
>>>>>>>>>>>>
>>>>>>>>>>>> Department of Evolutionary Biology and Environmental Studies
>>>>>>>>>>>> University of Zürich
>>>>>>>>>>>> Office Y34-J-74
>>>>>>>>>>>> Winterthurerstrasse 190
>>>>>>>>>>>> 8075 Zürich
>>>>>>>>>>>> Switzerland
>>>>>>>>>>>>
>>>>>>>>>>>> Office: +41 (0)44 635 47 64
>>>>>>>>>>>> Cell: +41 (0)78 630 66 57
>>>>>>>>>>>> email: rainer.k...@uzh.ch <mailto:rainer.k...@uzh.ch>
>>>>>>>>>>>> rai...@krugs.de <mailto:rai...@krugs.de>
>>>>>>>>>>>> Skype: RMkrug
>>>>>>>>>>>>
>>>>>>>>>>>> PGP: 0x0F52F982
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
>>>>>>>>>> Biology, UCT), Dipl. Phys. (Germany)
>>>>>>>>>>
>>>>>>>>>> Orcid ID: 0000-0002-7490-0066
>>>>>>>>>>
>>>>>>>>>> Department of Evolutionary Biology and Environmental Studies
>>>>>>>>>> University of Zürich
>>>>>>>>>> Office Y34-J-74
>>>>>>>>>> Winterthurerstrasse 190
>>>>>>>>>> 8075 Zürich
>>>>>>>>>> Switzerland
>>>>>>>>>>
>>>>>>>>>> Office: +41 (0)44 635 47 64
>>>>>>>>>> Cell: +41 (0)78 630 66 57
>>>>>>>>>> email: rainer.k...@uzh.ch <mailto:rainer.k...@uzh.ch>
>>>>>>>>>> rai...@krugs.de <mailto:rai...@krugs.de>
>>>>>>>>>> Skype: RMkrug
>>>>>>>>>>
>>>>>>>>>> PGP: 0x0F52F982
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> [[alternative HTML version deleted]]
>>>>>>>>> _______________________________________________
>>>>>>>>> R-SIG-Mac mailing list
>>>>>>>>> R-SIG-Mac@r-project.org
>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> R-SIG-Mac mailing list
>>>>>>> R-SIG-Mac@r-project.org
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>
>>>>>> --
>>>>>> Peter Dalgaard, Professor,
>>>>>> Center for Statistics, Copenhagen Business School
>>>>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>>>>>> Phone: (+45)38153501
>>>>>> Office: A 4.23
>>>>>> Email: pd....@cbs.dk Priv: pda...@gmail.com
>>>>>>
>>>>>> _______________________________________________
>>>>>> R-SIG-Mac mailing list
>>>>>> R-SIG-Mac@r-project.org
>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>
>>>>
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac@r-project.org <mailto:R-SIG-Mac@r-project.org>
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>
>>
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
