my 12:35 email and the attached tmp.txt are from the Terminal.app, No emacs/ESS involved.
On Fri, May 29, 2020 at 3:13 PM Duncan Murdoch <murdoch.dun...@gmail.com> wrote: > > On 29/05/2020 2:21 p.m., Richard M. Heiberger wrote: > > I attempted to update xquartz when I updated to Catalina, and the same > > number is still the current version number. > > > > Here is a related issue, attached tmp2.txt is the R transcript. > > The interesting thing here is that rgl.quit() prevents rgl from being > > reattached. > > Generally speaking rgl doesn't want to be reloaded in the same R > session: detaching it doesn't clean up everything. That's not > something that I'd put any priority on fixing, whereas I would look at > the problems you're having on startup if I could reproduce them. > > I wonder if ESS is involved somehow: your sessionInfo listed ESSR on > the search list. Do you have the same issues with plain R from the > console, or R.app? > > > Is there an rgl equivalent for dev.cur()? > > There's rgl.cur(). rgl only supports two kinds of devices: on a Mac or > Linux they'd be displayed as glX or null. Windows also supports the > null device (which doesn't display anything), and a different one to > display within R: I forget how the name is displayed. > > It might be that you'll need to set options(rgl.useNULL) before starting > rgl, and only use the null device. It won't display anything in R, but > allows you to call rglwidget() for a display in a browser. > > Duncan Murdoch > > > On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch <murdoch.dun...@gmail.com> > > wrote: > >> > >> On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote: > >>> I have the same Xquartz as you. > >> > >> I'd guess it should be updated. Generally XQuartz needs updates with > >> every MacOS release, and your 10.15.4 is two releases further along than > >> my 10.13.6. > >> > >>> I have rgl-0.100.50 from CRAN > >> > >> You could update that, but I doubt if it would make any difference. > >> > >>> Apple is macOS Catalina, Version 10.15.4 > >>> Do you need hardware information? > >>> MacBpok Air (13 -inch, Mid 2012) > >>> Processor 2GHz Dual-Core Intel Core i7 > >>> Memory 8 GB 1600 MHz DDR3 > >>> Graphics Intel HD Graphics 4000 1536 MB > >> > >> I think the XQuartz issue is most likely to help, but if it doesn't, I'm > >> not sure what I could suggest: I don't have Catalina. > >> > >> Duncan Murdoch > >>> > >>> > >>> from the Terminal App: > >>> The Apple Crash Report is in the attached tmp.txt > >>> I didn't send it to Apple. > >>> > >>> R version 4.0.0 (2020-04-24) -- "Arbor Day" > >>> > >>> Copyright (C) 2020 The R Foundation for Statistical Computing > >>> > >>> Platform: x86_64-apple-darwin17.0 (64-bit) > >>> > >>> > >>> R is free software and comes with ABSOLUTELY NO WARRANTY. > >>> > >>> You are welcome to redistribute it under certain conditions. > >>> > >>> Type 'license()' or 'licence()' for distribution details. > >>> > >>> > >>> Natural language support but running in an English locale > >>> > >>> > >>> R is a collaborative project with many contributors. > >>> > >>> Type 'contributors()' for more information and > >>> > >>> 'citation()' on how to cite R or R packages in publications. > >>> > >>> > >>> Type 'demo()' for some demos, 'help()' for on-line help, or > >>> > >>> 'help.start()' for an HTML browser interface to help. > >>> > >>> Type 'q()' to quit R. > >>> > >>> > >>>> library(rgl) > >>> > >>>> plot(1:10) > >>> > >>>> 2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL > >>>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), > >>>> > >>>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473 > >>> > >>> 2020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due to > >>> uncaught exception 'NSInternalInconsistencyException', reason: > >>> 'NSScreen reconfig must only happen on the main thread.' > >>> > >>> *** First throw call stack: > >>> > >>> ( > >>> > >>> 0 CoreFoundation 0x00007fff371698d7 > >>> __exceptionPreprocess + 250 > >>> > >>> 1 libobjc.A.dylib 0x00007fff6ff47a9e > >>> objc_exception_throw + 48 > >>> > >>> 2 CoreFoundation 0x00007fff37192bb0 > >>> +[NSException raise:format:arguments:] + 88 > >>> > >>> 3 Foundation 0x00007fff398de456 > >>> -[NSAssertionHandler > >>> handleFailureInFunction:file:lineNumber:description:] + 166 > >>> > >>> 4 AppKit 0x00007fff34503083 > >>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] + > >>> 361 > >>> > >>> 5 AppKit 0x00007fff34e4bda8 > >>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243 > >>> > >>> 6 AppKit 0x00007fff34502c85 > >>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144 > >>> > >>> 7 AppKit 0x00007fff345024dc > >>> _NSCGSDockMessageReceive + 268 > >>> > >>> 8 HIToolbox 0x00007fff35d34a3c > >>> _ZL12DockCallbackjjPvS_ + 1987 > >>> > >>> 9 HIServices 0x00007fff3539c8ec > >>> dockClientNotificationProc + 217 > >>> > >>> 10 SkyLight 0x00007fff6626f174 > >>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ + > >>> 1002 > >>> > >>> 11 SkyLight 0x00007fff6626de71 > >>> CGSSnarfAndDispatchDatagrams + 1671 > >>> > >>> 12 SkyLight 0x00007fff6649d5a5 > >>> SLSGetNextEventRecordInternal + 83 > >>> > >>> 13 SkyLight 0x00007fff6633bfbe > >>> SLEventCreateNextEvent + 136 > >>> > >>> 14 libXplugin.1.dylib 0x000000010686df0c > >>> ___xp_init_service_cg_event_port_block_invoke + 104 > >>> > >>> 15 libdispatch.dylib 0x00007fff7108d658 > >>> _dispatch_client_callout + 8 > >>> > >>> 16 libdispatch.dylib 0x00007fff7108f818 > >>> _dispatch_continuation_pop + 414 > >>> > >>> 17 libdispatch.dylib 0x00007fff7109f4be > >>> _dispatch_source_invoke + 2084 > >>> > >>> 18 libdispatch.dylib 0x00007fff71092af6 > >>> _dispatch_lane_serial_drain + 263 > >>> > >>> 19 libdispatch.dylib 0x00007fff710935d6 > >>> _dispatch_lane_invoke + 363 > >>> > >>> 20 libdispatch.dylib 0x00007fff7109cc09 > >>> _dispatch_workloop_worker_thread + 596 > >>> > >>> 21 libsystem_pthread.dylib 0x00007fff712eba3d > >>> _pthread_wqthread + 290 > >>> > >>> 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread > >>> + 15 > >>> > >>> ) > >>> > >>> libc++abi.dylib: terminating with uncaught exception of type NSException > >>> > >>> zsh: abort R > >>> > >>> rmh@rmhs-Air ~ % > >>> > >>> > >>> On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch > >>> <murdoch.dun...@gmail.com> wrote: > >>>> > >>>> I'm not seeing that with R-patched r78557, run from the console. I'm > >>>> not sure I have the same MacOS version as you (R prints the same thing, > >>>> Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl > >>>> 0.100.54. I'd guess the version of XQuartz may be important: I'm not > >>>> seeing rgl in the call stack, but libXplugin is there. Mine is "XQuartz > >>>> 2.7.11 (xorg-server 1.18.4)". > >>>> > >>>> Duncan Murdoch > >>>> > >>>> > >>>> > >>>> On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote: > >>>>> R version 4.0.0 (2020-04-24) -- "Arbor Day" > >>>>> Copyright (C) 2020 The R Foundation for Statistical Computing > >>>>> Platform: x86_64-apple-darwin17.0 (64-bit) > >>>>> > >>>>> R is free software and comes with ABSOLUTELY NO WARRANTY. > >>>>> You are welcome to redistribute it under certain conditions. > >>>>> Type 'license()' or 'licence()' for distribution details. > >>>>> > >>>>> Natural language support but running in an English locale > >>>>> > >>>>> R is a collaborative project with many contributors. > >>>>> Type 'contributors()' for more information and > >>>>> 'citation()' on how to cite R or R packages in publications. > >>>>> > >>>>> Type 'demo()' for some demos, 'help()' for on-line help, or > >>>>> 'help.start()' for an HTML browser interface to help. > >>>>> Type 'q()' to quit R. > >>>>> > >>>>>> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) > >>>>>> options(pager='cat') # rather take the ESS one > >>>>>> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient', > >>>>>> show.error.locations=TRUE) > >>>>>> version > >>>>> _ > >>>>> platform x86_64-apple-darwin17.0 > >>>>> arch x86_64 > >>>>> os darwin17.0 > >>>>> system x86_64, darwin17.0 > >>>>> status > >>>>> major 4 > >>>>> minor 0.0 > >>>>> year 2020 > >>>>> month 04 > >>>>> day 24 > >>>>> svn rev 78286 > >>>>> language R > >>>>> version.string R version 4.0.0 (2020-04-24) > >>>>> nickname Arbor Day > >>>>>> > >>>>>> library(rgl) > >>>>>> plot(1:10) > >>>>>> > >>>>> > >>>>> Process R abort trap: 6 at Fri May 29 11:32:59 2020 > >>>>> 2020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOL > >>>>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), > >>>>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473 > >>>>> 2020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to > >>>>> uncaught exception 'NSInternalInconsistencyException', reason: > >>>>> 'NSScreen reconfig must only happen on the main thread.' > >>>>> *** First throw call stack: > >>>>> ( > >>>>> 0 CoreFoundation 0x00007fff371698d7 > >>>>> __exceptionPreprocess + 250 > >>>>> 1 libobjc.A.dylib 0x00007fff6ff47a9e > >>>>> objc_exception_throw + 48 > >>>>> 2 CoreFoundation 0x00007fff37192bb0 > >>>>> +[NSException raise:format:arguments:] + 88 > >>>>> 3 Foundation 0x00007fff398de456 > >>>>> -[NSAssertionHandler > >>>>> handleFailureInFunction:file:lineNumber:description:] + 166 > >>>>> 4 AppKit 0x00007fff34503083 > >>>>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] + > >>>>> 361 > >>>>> 5 AppKit 0x00007fff34e4bda8 > >>>>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243 > >>>>> 6 AppKit 0x00007fff34502c85 > >>>>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144 > >>>>> 7 AppKit 0x00007fff345024dc > >>>>> _NSCGSDockMessageReceive + 268 > >>>>> 8 HIToolbox 0x00007fff35d34a3c > >>>>> _ZL12DockCallbackjjPvS_ + 1987 > >>>>> 9 HIServices 0x00007fff3539c8ec > >>>>> dockClientNotificationProc + 217 > >>>>> 10 SkyLight 0x00007fff6626f174 > >>>>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ + > >>>>> 1002 > >>>>> 11 SkyLight 0x00007fff6626de71 > >>>>> CGSSnarfAndDispatchDatagrams + 1671 > >>>>> 12 SkyLight 0x00007fff6649d5a5 > >>>>> SLSGetNextEventRecordInternal + 83 > >>>>> 13 SkyLight 0x00007fff6633bfbe > >>>>> SLEventCreateNextEvent + 136 > >>>>> 14 libXplugin.1.dylib 0x000000010ffa5f0c > >>>>> ___xp_init_service_cg_event_port_block_invoke + 104 > >>>>> 15 libdispatch.dylib 0x00007fff7108d658 > >>>>> _dispatch_client_callout + 8 > >>>>> 16 libdispatch.dylib 0x00007fff7108f818 > >>>>> _dispatch_continuation_pop + 414 > >>>>> 17 libdispatch.dylib 0x00007fff7109f4be > >>>>> _dispatch_source_invoke + 2084 > >>>>> 18 libdispatch.dylib 0x00007fff71092af6 > >>>>> _dispatch_lane_serial_drain + 263 > >>>>> 19 libdispatch.dylib 0x00007fff710935d6 > >>>>> _dispatch_lane_invoke + 363 > >>>>> 20 libdispatch.dylib 0x00007fff7109cc09 > >>>>> _dispatch_workloop_worker_thread + 596 > >>>>> 21 libsystem_pthread.dylib 0x00007fff712eba3d > >>>>> _pthread_wqthread + 290 > >>>>> 22 libsystem_pthread.dylib 0x00007fff712eab77 > >>>>> start_wqthread + 15 > >>>>> ) > >>>>> libc++abi.dylib: terminating with uncaught exception of type NSException > >>>>> > >>>>> _______________________________________________ > >>>>> R-SIG-Mac mailing list > >>>>> R-SIG-Mac@r-project.org > >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>>>> > >>>> > >> > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac