Dear Mac useRs, I can no longer run lme4 because I think I upgraded lme4 without being able to upgrade Matrix.
I am using: Mac OS 10.4.4 C compiler -- gcc 3.3 Fortran compiler -- g77 3.4.2 (with R install) R v. 2.2.1 (updated from 2.2.0 this morning) lme4 v. 0.995-1 I tried to use the RGUI to load the package source of Matrix 0.995-1 but it fails. It begins... trying URL 'http://cran.us.r-project.org/src/contrib/ Matrix_0.995-1.tar.gz' Content type 'application/x-tar' length 2458826 bytes opened URL ================================================== downloaded 2401Kb * Installing *source* package 'Matrix' ... ** libs gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c Csparse.c -o Csparse.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c HBMM.c -o HBMM.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c Metis_utils.c - o Metis_utils.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c R_ldl.c -o R_ldl.o ....more... ...and ends... gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -I. -fno-common -g -O2 -c kwayvolrefine.c -o kwayvolrefine.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -I. -fno-common -g -O2 -c kwayvolfm.c -o kwayvolfm.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -I. -fno-common -g -O2 -c subdomains.c -o subdomains.o ar -rucs ../Metis.a coarsen.o fm.o initpart.o match.o ccgraph.o memory.o pmetis.o pqueue.o refine.o util.o timing.o debug.o bucketsort.o graph.o stat.o kmetis.o kwayrefine.o kwayfm.o balance.o ometis.o srefine.o sfm.o separator.o mincover.o mmd.o mesh.o meshpart.o frename.o fortran.o myqsort.o compress.o parmetis.o estmem.o mpmetis.o mcoarsen.o mmatch.o minitpart.o mbalance.o mrefine.o mutil.o mfm.o mkmetis.o mkwayrefine.o mkwayfmh.o mrefine2.o minitpart2.o mbalance2.o mfm2.o kvmetis.o kwayvolrefine.o kwayvolfm.o subdomains.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c ldl.c -o ldl.o ar -rucs ../LDL.a ldl.o gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib - o Matrix.so Csparse.o HBMM.o Metis_utils.o R_ldl.o Tsparse.o init.o lmer.o Mutils.o chm_common.o dense.o dCholCMatrix.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsTMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o iohb.o ldense.o lCholCMatrix.o lgCMatrix.o lgTMatrix.o lsCMatrix.o ltCMatrix.o mmio.o triplet_to_col.o CHOLMOD.a UMFPACK.a COLAMD.a CCOLAMD.a AMD.a Metis.a LDL.a -framework vecLib -lcc_dynamic -F/Library/Frameworks/ R.framework/.. -framework R ld: multiple definitions of symbol _c Csparse.o definition of _c in section (__DATA,__common) Tsparse.o definition of _c in section (__DATA,__common) init.o definition of _c in section (__DATA,__common) lmer.o definition of _c in section (__DATA,__common) chm_common.o definition of _c in section (__DATA,__common) dense.o definition of _c in section (__DATA,__common) dgCMatrix.o definition of _c in section (__DATA,__common) dgTMatrix.o definition of _c in section (__DATA,__common) dsCMatrix.o definition of _c in section (__DATA,__common) ld: warning multiple definitions of symbol _signgam /Library/Frameworks/R.framework/../R.framework/R(lgamma.lo) definition of _signgam /usr/lib/libSystem.dylib(gamma9.o) definition of _signgam ** Removing '/Library/Frameworks/R.framework/Versions/2.2/Resources/ library/Matrix' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.2/ Resources/library/Matrix' make: *** [Matrix.so] Error 1 ERROR: compilation failed for package 'Matrix' The downloaded packages are in /private/tmp/RtmpyMhutL/downloaded_packages > I would very grateful for any assistance. Cheers, Hank Dr. Martin Henry H. Stevens, Assistant Professor 338 Pearson Hall Botany Department Miami University Oxford, OH 45056 Office: (513) 529-4206 Lab: (513) 529-4262 FAX: (513) 529-4243 http://www.cas.muohio.edu/~stevenmh/ http://www.muohio.edu/ecology/ http://www.muohio.edu/botany/ "E Pluribus Unum" _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
