David, Apologies if you get this twice, I changed some of my email addresses recently...
To install 64-bit rgl, on my system, I install it from within a terminal as shown (abbreviated) below. From inside R.app it always fails. I appended the error I get as well. These listings I think correspond to what you and prof Ripley show in the emails. I also use XQuartz 2.3.. Regards, Rob ----------------In a terminal--------------------------- Robs-Intel:Downloads rob$ R_ARCH=/x86_64 R CMD INSTALL --configure- args='--disable-carbon' rgl_0.83-3.tar.gz * Installing to library /Library/Frameworks/R.framework/Resources/ library * Installing *source* package rgl ... checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-4.2 -arch x86_64 - std=gnu99 -E checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... (cached) yes checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... (cached) none needed checking for libpng-config... yes configure: using libpng-config configure: using libpng dynamic linkage checking for X... libraries /usr/X11/lib, headers /usr/X11/include checking for glEnd in -lGL... yes checking for gluProject in -lGLU... yes checking for freetype-config... yes configure: using Freetype and FTGL configure: creating ./config.status config.status: creating src/Makevars ** libs ** arch - x86_64 g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/ include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/ System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -I/ usr/X11/include/libpng12 -I/usr/X11/include -DDarwin -DNO_GL_PREFIX -I/ usr/X11R6/include -DHAVE_FREETYPE -Iext/ftgl -I/usr/X11/include/ freetype2 -I/usr/X11/include -Iext -I/usr/local/include -g -O2 - fPIC -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/ include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/ System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -I/ usr/X11/include/libpng12 -I/usr/X11/include -DDarwin -DNO_GL_PREFIX -I/ usr/X11R6/include -DHAVE_FREETYPE -Iext/ftgl -I/usr/X11/include/ freetype2 -I/usr/X11/include -Iext -I/usr/local/include -g -O2 - fPIC -g -O2 -c Background.cpp -o Background.o ... g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names - undefined dynamic_lookup -single_module -multiply_defined suppress -L/ usr/local/lib -o rgl.so BBoxDeco.o Background.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o PointSet.o PrimitiveSet.o QuadSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o math.o osxgui.o osxlib.o par3d.o pixmap.o render.o rglview.o scene.o select.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -framework OpenGL -dylib_file /System/ Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/ System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/ libGL.dylib -L/usr/X11/lib -lpng12 -L/usr/X11/lib -lX11 -L/usr/X11/ lib -lfreetype -lz -Wl,-framework,CoreServices -Wl,- framework,ApplicationServices -F/Library/Frameworks/R.framework/.. - framework R -Wl,-framework -Wl,CoreFoundation ** R ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices >>> Building/Updating help pages for package 'rgl' Formats: text html latex example 3dobjects text html latex example aspect3d text html latex example axes3d text html latex example bbox text html latex example bg text html latex example ... spin3d text html latex example sprites text html latex example subdivision3d text html latex example surface text html latex example surface3d text html latex example texts text html latex example viewpoint text html latex example ** building package indices ... * DONE (rgl) Robs-Intel:Downloads rob$ ----------------Inside R.app------------------------------------------------------ trying URL 'http://cran.stat.ucla.edu/src/contrib/rgl_0.83-3.tar.gz' Content type 'application/x-tar' length 1653379 bytes (1.6 Mb) opened URL ================================================== downloaded 1.6 Mb * Installing *source* package rgl ... checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-4.2 -arch x86_64 - std=gnu99 -E checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... (cached) yes checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... (cached) none needed checking for libpng-config... no checking libpng... checking for grep that handles long lines and - e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking png.h usability... no checking png.h presence... no checking for png.h... no checking for png_read_update_info in -lpng... no configure: libpng header and lib found configure: using libpng dynamic linkage checking for X... no configure: error: X11 not found but required, configure aborted. ERROR: configuration failed for package rgl * Removing /Library/Frameworks/R.framework/Versions/2.9/Resources/ library/rgl * Restoring previous /Library/Frameworks/R.framework/Versions/2.9/ Resources/library/rgl The downloaded packages are in /private/var/folders/RC/RC96PNSWFMORQM4VyHEgik+++TI/-Tmp-/RtmpZR2jwu/ downloaded_packages > On Mar 2, 2009, at 4:13 PM, David Winsemius wrote: > I tried to install the current version of rgl on R-forge from source > from the 64 bit R-GUI and get this error during installation : > > <entire listing copied below> > checking for X... no > configure: error: X11 not found but required, configure aborted. > ERROR: configuration failed for package 'rgl' > ** Removing '/Library/Frameworks/R.framework/Resources/library/rgl' > ** Restoring previous '/Library/Frameworks/R.framework/Resources/ > library/rgl' > > The downloaded packages are in > /private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/ > Rtmp3Z2KtQ/downloaded_packages > > I do have an X11 installation, XQuartz 2.3.1 (xorg-server 1.4.2- > apple17), and wonder whether I need to do something to make X11's > availability visible to the Installer? I believe that it loads under > the 32 bit GUI although the version appears to be 0.82-2. > > -- > David Winsemius > > > sessionInfo() > R version 2.8.1 Patched (2009-01-07 r47515) > i386-apple-darwin9.6.0 > > locale: > en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] mapproj_1.1-7.2 maps_2.0-40 > > loaded via a namespace (and not attached): > [1] grid_2.8.1 lattice_0.17-20 tools_2.8.1 > Warning message: > In install.packages(c("rgl"), lib = "/Library/Frameworks/R.framework/ > Resources/library/", : > installation of package 'rgl' had non-zero exit status > > capabilities() > jpeg png tiff tcltk X11 aqua http/ftp > sockets libxml fifo cledit iconv > TRUE TRUE FALSE TRUE TRUE TRUE TRUE > TRUE TRUE TRUE TRUE TRUE > NLS profmem cairo > TRUE FALSE TRUE > ---- intall listing follows---- > trying URL 'http://R-Forge.R-project.org/src/contrib/rgl_0.83-751.tar.gz' > Content type 'application/x-gzip' length 1656674 bytes (1.6 Mb) > opened URL > ================================================== > downloaded 1.6 Mb > > * Installing *source* package 'rgl' ... > checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99 > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes > checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO > C89... none needed > checking how to run the C preprocessor... gcc-4.2 -arch x86_64 - > std=gnu99 -E > checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99 > checking whether we are using the GNU C compiler... (cached) yes > checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... > (cached) yes > checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO > C89... (cached) none needed > checking for libpng-config... yes > configure: using libpng-config > configure: using libpng dynamic linkage > checking for X... no > configure: error: X11 not found but required, configure aborted. > ERROR: configuration failed for package 'rgl' > ** Removing '/Library/Frameworks/R.framework/Resources/library/rgl' > ** Restoring previous '/Library/Frameworks/R.framework/Resources/ > library/rgl' > > The downloaded packages are in > /private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/ > Rtmp3Z2KtQ/downloaded_packages > ----end listing---- > > On Mar 2, 2009, at 4:39 PM, Duncan Murdoch wrote: > >> On 3/2/2009 2:48 PM, chaogai wrote: >>> Oops, sorry >>> R version 2.8.1 (2008-12-22) >>> i686-pc-linux-gnu >>> locale: >>> LC_CTYPE >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_NUMERIC >>> = >>> C >>> ;LC_TIME >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_COLLATE >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_MONETARY >>> = >>> C >>> ;LC_MESSAGES >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_PAPER >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_NAME >>> = >>> C >>> ;LC_ADDRESS >>> =C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C >>> attached base packages: >>> [1] tcltk stats graphics grDevices utils datasets >>> methods >>> [8] base >>> other attached packages: >>> [1] rgl_0.81 svGUI_0.9-44 svSocket_0.9-43 svMisc_0.9-46 >> >> 0.81 isn't the current version of rgl on CRAN. Please try that >> one, or even better, the development version on R-forge. >> >> Duncan Murdoch >>> Duncan Murdoch wrote: >>>> On 3/2/2009 2:00 PM, chaogai wrote: >>>>> Whatever it is, it is also happening on my Acer, Suse 11.1, 32 >>>>> bits, >>>>> self build R. >>>> >>>> Versions of R and rgl? >>>> >>>> Duncan Murdoch >>>> >>>>> >>>>> Kees >>>>> >>>>> Bo Zhou wrote: >>>>>> Thanks Duncan. >>>>>> >>>>>> I haven't got a chance to try it in windows yet. But I won't be >>>>>> surprised if it's my driver's fault. I had OpenGL problems on >>>>>> this >>>>>> dell laptop before..... >>>>>> >>>>>> >>>>>>> Date: Sun, 1 Mar 2009 18:29:20 -0500 >>>>>>> From: murd...@stats.uwo.ca >>>>>>> To: bozhou1...@hotmail.com >>>>>>> CC: remkoduur...@gmail.com; r-h...@r-project.org >>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem. >>>>>>> >>>>>>> On 01/03/2009 5:54 PM, Bo Zhou wrote: >>>>>>> >>>>>>>> site down...... >>>>>>>> >>>>>>>> here is the code >>>>>>>> >>>>>>>> library(rgl) >>>>>>>> >>>>>>>> plot1: >>>>>>>> persp3d(x=1:11,y=1:210,z=matrix(rep(1,11*210), >>>>>>>> 11,210),col=matrix(rep("#FF0000",11*210),11,210)) >>>>>>>> >>>>>>>> >>>>>>>> plot2: >>>>>>>> persp3d(x=1:11,y=1:10,z=matrix(rep(1,11*10), >>>>>>>> 11,10),col=matrix(rep("#FF0000",11*10),11,10)) >>>>>>>> >>>>>>>> >>>>>>> Works fine on Mac OS 10.5 too. Looks like a bug in your OpenGL >>>>>>> driver... >>>>>>> >>>>>>> Duncan Murdoch >>>>>>> >>>>>>> >>>>>>> >>>>>>>> Thanks! >>>>>>>> >>>>>>>> Bo >>>>>>>> >>>>>>>>> Date: Mon, 2 Mar 2009 09:28:31 +1100 >>>>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem. >>>>>>>>> From: remkoduur...@gmail.com >>>>>>>>> To: bozhou1...@hotmail.com >>>>>>>>> >>>>>>>>> I would not mind trying, but the link no longer works... >>>>>>>>> >>>>>>>>> Remko >>>>>>>>> >>>>>>>>> >>>>>>>>> ------------------------------------------------- >>>>>>>>> Remko Duursma >>>>>>>>> Post-Doctoral Fellow >>>>>>>>> >>>>>>>>> Centre for Plant and Food Science >>>>>>>>> University of Western Sydney >>>>>>>>> Hawkesbury Campus >>>>>>>>> Richmond NSW 2753 >>>>>>>>> >>>>>>>>> Dept of Biological Science >>>>>>>>> Macquarie University >>>>>>>>> North Ryde NSW 2109 >>>>>>>>> Australia >>>>>>>>> >>>>>>>>> Mobile: +61 (0)422 096908 >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On Mon, Mar 2, 2009 at 8:16 AM, Bo Zhou <bozhou1...@hotmail.com >>>>>>>>> > >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>>> Thanks, Duncan. >>>>>>>>>> >>>>>>>>>> What's your platform? Could this be an issues related to my >>>>>>>>>> platform? I'm on Ubuntu 8.10 64bit using cran's R package. I >>>>>>>>>> built rgl package on my machine using install.packages(). I'm >>>>>>>>>> going to give it a try in windows. >>>>>>>>>> >>>>>>>>>> I would be very grateful if anyone using similar setup could >>>>>>>>>> give it a try. >>>>>>>>>> >>>>>>>>>> Thanks, >>>>>>>>>> Bo >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> Date: Sun, 1 Mar 2009 07:03:10 -0500 >>>>>>>>>>> From: murd...@stats.uwo.ca >>>>>>>>>>> To: bozhou1...@hotmail.com >>>>>>>>>>> CC: r-h...@r-project.org >>>>>>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem. >>>>>>>>>>> >>>>>>>>>>> On 28/02/2009 4:20 PM, Bo Zhou wrote: >>>>>>>>>>> >>>>>>>>>>>> Hi guys, >>>>>>>>>>>> >>>>>>>>>>>> I hit on a problem when I use rgl. >>>>>>>>>>>> >>>>>>>>>>>> Could you try to run the code here in this link and see why >>>>>>>>>>>> the first persp3d gives a red bounding box and the second >>>>>>>>>>>> shows black? >>>>>>>>>>>> >>>>>>>>>>> They both show as black on my system. >>>>>>>>>>> >>>>>>>>>>> Duncan Murdoch >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>>> http://rafb.net/p/g1i7ur33.html >>>>>>>>>>>> >>>>>>>>>>>> (sorry for not pasting the code here directly but my >>>>>>>>>>>> previous >>>>>>>>>>>> email got filtered by this list so I suspect my code looks >>>>>>>>>>>> like spam to the spam filter) >>>>>>>>>>>> >>>>>>>>>>>> I'm expecting black color to be the right result but the >>>>>>>>>>>> code >>>>>>>>>>>> is virtually same except different data size. Looks like >>>>>>>>>>>> a mem >>>>>>>>>>>> bug to me? >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> BTW you will need to install the rgl package >>>>>>>>>>>> >>>>>>>>>>>> Thanks, >>>>>>>>>>>> >>>>>>>>>>>> Bo >>>>>>>>>>>> >>>>>>>>>>>> _________________________________________________________________ >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> [[alternative HTML version deleted]] >>>>>>>>>>>> >>>>>>>>>>>> ______________________________________________ >>>>>>>>>>>> r-h...@r-project.org mailing list >>>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>>>>>>>> PLEASE do read the posting guide >>>>>>>>>>>> http://www.R-project.org/posting-guide.html >>>>>>>>>>>> and provide commented, minimal, self-contained, >>>>>>>>>>>> reproducible >>>>>>>>>>>> code. >>>>>>>>>>>> >>>>>>>>>> _________________________________________________________________ >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> [[alternative HTML version deleted]] >>>>>>>>>> >>>>>>>>>> ______________________________________________ >>>>>>>>>> r-h...@r-project.org mailing list >>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>>>>>> PLEASE do read the posting guide >>>>>>>>>> http://www.R-project.org/posting-guide.html >>>>>>>>>> and provide commented, minimal, self-contained, >>>>>>>>>> reproducible code. >>>>>>>>>> >>>>>>>>>> >>>>>>>> _________________________________________________________________ >>>>>>>> >>>>>>>> >>>>>>>> [[alternative HTML version deleted]] >>>>>>>> >>>>>>>> ______________________________________________ >>>>>>>> r-h...@r-project.org mailing list >>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>>>> PLEASE do read the posting guide >>>>>>>> http://www.R-project.org/posting-guide.html >>>>>>>> and provide commented, minimal, self-contained, reproducible >>>>>>>> code. >>>>>>>> >>>>>> >>>>>> _________________________________________________________________ >>>>>> Hotmail® is up to 70% faster. Now good news travels really fast. >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> ------------------------------------------------------------------------ >>>>>> >>>>>> >>>>>> ______________________________________________ >>>>>> r-h...@r-project.org mailing list >>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>> PLEASE do read the posting guide >>>>>> http://www.R-project.org/posting-guide.html >>>>>> and provide commented, minimal, self-contained, reproducible >>>>>> code. >>>>>> >>>>> >>>>> ______________________________________________ >>>>> r-h...@r-project.org mailing list >>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>> PLEASE do read the posting guide >>>>> http://www.R-project.org/posting-guide.html >>>>> and provide commented, minimal, self-contained, reproducible code. >>>> >> >> ______________________________________________ >> r-h...@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/r-sig-mac On Mar 2, 2009, at 4:13 PM, David Winsemius wrote: > I tried to install the current version of rgl on R-forge from source > from the 64 bit R-GUI and get this error during installation : > > <entire listing copied below> > checking for X... no > configure: error: X11 not found but required, configure aborted. > ERROR: configuration failed for package 'rgl' > ** Removing '/Library/Frameworks/R.framework/Resources/library/rgl' > ** Restoring previous '/Library/Frameworks/R.framework/Resources/ > library/rgl' > > The downloaded packages are in > /private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/ > Rtmp3Z2KtQ/downloaded_packages > > I do have an X11 installation, XQuartz 2.3.1 (xorg-server 1.4.2- > apple17), and wonder whether I need to do something to make X11's > availability visible to the Installer? I believe that it loads under > the 32 bit GUI although the version appears to be 0.82-2. > > -- > David Winsemius > > > sessionInfo() > R version 2.8.1 Patched (2009-01-07 r47515) > i386-apple-darwin9.6.0 > > locale: > en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] mapproj_1.1-7.2 maps_2.0-40 > > loaded via a namespace (and not attached): > [1] grid_2.8.1 lattice_0.17-20 tools_2.8.1 > Warning message: > In install.packages(c("rgl"), lib = "/Library/Frameworks/R.framework/ > Resources/library/", : > installation of package 'rgl' had non-zero exit status > > capabilities() > jpeg png tiff tcltk X11 aqua http/ftp > sockets libxml fifo cledit iconv > TRUE TRUE FALSE TRUE TRUE TRUE TRUE > TRUE TRUE TRUE TRUE TRUE > NLS profmem cairo > TRUE FALSE TRUE > ---- intall listing follows---- > trying URL 'http://R-Forge.R-project.org/src/contrib/rgl_0.83-751.tar.gz' > Content type 'application/x-gzip' length 1656674 bytes (1.6 Mb) > opened URL > ================================================== > downloaded 1.6 Mb > > * Installing *source* package 'rgl' ... > checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99 > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes > checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO > C89... none needed > checking how to run the C preprocessor... gcc-4.2 -arch x86_64 - > std=gnu99 -E > checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99 > checking whether we are using the GNU C compiler... (cached) yes > checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... > (cached) yes > checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO > C89... (cached) none needed > checking for libpng-config... yes > configure: using libpng-config > configure: using libpng dynamic linkage > checking for X... no > configure: error: X11 not found but required, configure aborted. > ERROR: configuration failed for package 'rgl' > ** Removing '/Library/Frameworks/R.framework/Resources/library/rgl' > ** Restoring previous '/Library/Frameworks/R.framework/Resources/ > library/rgl' > > The downloaded packages are in > /private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/ > Rtmp3Z2KtQ/downloaded_packages > ----end listing---- > > On Mar 2, 2009, at 4:39 PM, Duncan Murdoch wrote: > >> On 3/2/2009 2:48 PM, chaogai wrote: >>> Oops, sorry >>> R version 2.8.1 (2008-12-22) >>> i686-pc-linux-gnu >>> locale: >>> LC_CTYPE >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_NUMERIC >>> = >>> C >>> ;LC_TIME >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_COLLATE >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_MONETARY >>> = >>> C >>> ;LC_MESSAGES >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_PAPER >>> = >>> en_US >>> .UTF >>> -8 >>> ;LC_NAME >>> = >>> C >>> ;LC_ADDRESS >>> =C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C >>> attached base packages: >>> [1] tcltk stats graphics grDevices utils datasets >>> methods >>> [8] base >>> other attached packages: >>> [1] rgl_0.81 svGUI_0.9-44 svSocket_0.9-43 svMisc_0.9-46 >> >> 0.81 isn't the current version of rgl on CRAN. Please try that >> one, or even better, the development version on R-forge. >> >> Duncan Murdoch >>> Duncan Murdoch wrote: >>>> On 3/2/2009 2:00 PM, chaogai wrote: >>>>> Whatever it is, it is also happening on my Acer, Suse 11.1, 32 >>>>> bits, >>>>> self build R. >>>> >>>> Versions of R and rgl? >>>> >>>> Duncan Murdoch >>>> >>>>> >>>>> Kees >>>>> >>>>> Bo Zhou wrote: >>>>>> Thanks Duncan. >>>>>> >>>>>> I haven't got a chance to try it in windows yet. But I won't be >>>>>> surprised if it's my driver's fault. I had OpenGL problems on >>>>>> this >>>>>> dell laptop before..... >>>>>> >>>>>> >>>>>>> Date: Sun, 1 Mar 2009 18:29:20 -0500 >>>>>>> From: murd...@stats.uwo.ca >>>>>>> To: bozhou1...@hotmail.com >>>>>>> CC: remkoduur...@gmail.com; r-h...@r-project.org >>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem. >>>>>>> >>>>>>> On 01/03/2009 5:54 PM, Bo Zhou wrote: >>>>>>> >>>>>>>> site down...... >>>>>>>> >>>>>>>> here is the code >>>>>>>> >>>>>>>> library(rgl) >>>>>>>> >>>>>>>> plot1: >>>>>>>> persp3d(x=1:11,y=1:210,z=matrix(rep(1,11*210), >>>>>>>> 11,210),col=matrix(rep("#FF0000",11*210),11,210)) >>>>>>>> >>>>>>>> >>>>>>>> plot2: >>>>>>>> persp3d(x=1:11,y=1:10,z=matrix(rep(1,11*10), >>>>>>>> 11,10),col=matrix(rep("#FF0000",11*10),11,10)) >>>>>>>> >>>>>>>> >>>>>>> Works fine on Mac OS 10.5 too. Looks like a bug in your OpenGL >>>>>>> driver... >>>>>>> >>>>>>> Duncan Murdoch >>>>>>> >>>>>>> >>>>>>> >>>>>>>> Thanks! >>>>>>>> >>>>>>>> Bo >>>>>>>> >>>>>>>>> Date: Mon, 2 Mar 2009 09:28:31 +1100 >>>>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem. >>>>>>>>> From: remkoduur...@gmail.com >>>>>>>>> To: bozhou1...@hotmail.com >>>>>>>>> >>>>>>>>> I would not mind trying, but the link no longer works... >>>>>>>>> >>>>>>>>> Remko >>>>>>>>> >>>>>>>>> >>>>>>>>> ------------------------------------------------- >>>>>>>>> Remko Duursma >>>>>>>>> Post-Doctoral Fellow >>>>>>>>> >>>>>>>>> Centre for Plant and Food Science >>>>>>>>> University of Western Sydney >>>>>>>>> Hawkesbury Campus >>>>>>>>> Richmond NSW 2753 >>>>>>>>> >>>>>>>>> Dept of Biological Science >>>>>>>>> Macquarie University >>>>>>>>> North Ryde NSW 2109 >>>>>>>>> Australia >>>>>>>>> >>>>>>>>> Mobile: +61 (0)422 096908 >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On Mon, Mar 2, 2009 at 8:16 AM, Bo Zhou <bozhou1...@hotmail.com >>>>>>>>> > >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>>> Thanks, Duncan. >>>>>>>>>> >>>>>>>>>> What's your platform? Could this be an issues related to my >>>>>>>>>> platform? I'm on Ubuntu 8.10 64bit using cran's R package. I >>>>>>>>>> built rgl package on my machine using install.packages(). I'm >>>>>>>>>> going to give it a try in windows. >>>>>>>>>> >>>>>>>>>> I would be very grateful if anyone using similar setup could >>>>>>>>>> give it a try. >>>>>>>>>> >>>>>>>>>> Thanks, >>>>>>>>>> Bo >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> Date: Sun, 1 Mar 2009 07:03:10 -0500 >>>>>>>>>>> From: murd...@stats.uwo.ca >>>>>>>>>>> To: bozhou1...@hotmail.com >>>>>>>>>>> CC: r-h...@r-project.org >>>>>>>>>>> Subject: Re: [R] rgl persp3d bounding box color problem. >>>>>>>>>>> >>>>>>>>>>> On 28/02/2009 4:20 PM, Bo Zhou wrote: >>>>>>>>>>> >>>>>>>>>>>> Hi guys, >>>>>>>>>>>> >>>>>>>>>>>> I hit on a problem when I use rgl. >>>>>>>>>>>> >>>>>>>>>>>> Could you try to run the code here in this link and see why >>>>>>>>>>>> the first persp3d gives a red bounding box and the second >>>>>>>>>>>> shows black? >>>>>>>>>>>> >>>>>>>>>>> They both show as black on my system. >>>>>>>>>>> >>>>>>>>>>> Duncan Murdoch >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>>> http://rafb.net/p/g1i7ur33.html >>>>>>>>>>>> >>>>>>>>>>>> (sorry for not pasting the code here directly but my >>>>>>>>>>>> previous >>>>>>>>>>>> email got filtered by this list so I suspect my code looks >>>>>>>>>>>> like spam to the spam filter) >>>>>>>>>>>> >>>>>>>>>>>> I'm expecting black color to be the right result but the >>>>>>>>>>>> code >>>>>>>>>>>> is virtually same except different data size. Looks like >>>>>>>>>>>> a mem >>>>>>>>>>>> bug to me? >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> BTW you will need to install the rgl package >>>>>>>>>>>> >>>>>>>>>>>> Thanks, >>>>>>>>>>>> >>>>>>>>>>>> Bo >>>>>>>>>>>> >>>>>>>>>>>> _________________________________________________________________ >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> [[alternative HTML version deleted]] >>>>>>>>>>>> >>>>>>>>>>>> ______________________________________________ >>>>>>>>>>>> r-h...@r-project.org mailing list >>>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>>>>>>>> PLEASE do read the posting guide >>>>>>>>>>>> http://www.R-project.org/posting-guide.html >>>>>>>>>>>> and provide commented, minimal, self-contained, >>>>>>>>>>>> reproducible >>>>>>>>>>>> code. >>>>>>>>>>>> >>>>>>>>>> _________________________________________________________________ >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> [[alternative HTML version deleted]] >>>>>>>>>> >>>>>>>>>> ______________________________________________ >>>>>>>>>> r-h...@r-project.org mailing list >>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>>>>>> PLEASE do read the posting guide >>>>>>>>>> http://www.R-project.org/posting-guide.html >>>>>>>>>> and provide commented, minimal, self-contained, >>>>>>>>>> reproducible code. >>>>>>>>>> >>>>>>>>>> >>>>>>>> _________________________________________________________________ >>>>>>>> >>>>>>>> >>>>>>>> [[alternative HTML version deleted]] >>>>>>>> >>>>>>>> ______________________________________________ >>>>>>>> r-h...@r-project.org mailing list >>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>>>> PLEASE do read the posting guide >>>>>>>> http://www.R-project.org/posting-guide.html >>>>>>>> and provide commented, minimal, self-contained, reproducible >>>>>>>> code. >>>>>>>> >>>>>> >>>>>> _________________________________________________________________ >>>>>> Hotmail® is up to 70% faster. Now good news travels really fast. >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> ------------------------------------------------------------------------ >>>>>> >>>>>> >>>>>> ______________________________________________ >>>>>> r-h...@r-project.org mailing list >>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>> PLEASE do read the posting guide >>>>>> http://www.R-project.org/posting-guide.html >>>>>> and provide commented, minimal, self-contained, reproducible >>>>>> code. >>>>>> >>>>> >>>>> ______________________________________________ >>>>> r-h...@r-project.org mailing list >>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>> PLEASE do read the posting guide >>>>> http://www.R-project.org/posting-guide.html >>>>> and provide commented, minimal, self-contained, reproducible code. >>>> >> >> ______________________________________________ >> r-h...@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/r-sig-mac [[alternative HTML version deleted]]
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