Re: [R-SIG-Mac] XML pachage on mac osx leopard

Sun, 14 Jun 2009 16:22:08 -0700 

I moved ttemporary the xml2-config :

sudo mv /usr/bin/xml2-config /usr/bin/xml2-config.back

then done a simlink :

sudo ln -s /usr/local/bin/ml2-config /usr/bin/

then i succesfull installed the needed packages (spgrass6)

... now i ripristinate the system libxml2

i hope the package will work  :-/
... or ripristinate the system libxml will broke the xml pamackage in R ? 


any code strip to see if it continue to works as aspected ?

thanks !!!

Massimo Di Stefano


p.s.

how to change in R  the order of searching path ?
in usr local i've some libraries installed from source
that maybe are newer vdersion that the system version
...
i've some unix stuff installed in my framework too (gdal, jpeg, libtiff and others) to install rgdal im using : --with-configure-args option in the R CMD install command 
...
 it is possible to add frameworks to the R search-lib path ?

Il giorno 14/giu/09, alle ore 23:58, Prof Brian Ripley ha scritto:
Which version of package XML is this? For 2.5.0 at least, you need a more recent version of libxml2 (as the log you show does warn you). 

The CRAN install log at

http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/XML-00install.html

shows the same problem for XML 2.5.1.


i also tried to install :

libxml2-sources-2.7.3

using no specific option in configure, just  : ./configure make make

install

(in usr/local) but the log seems to not changes.


Ah, but note you have


checking for xml2-config... /usr/bin/xml2-config
Is /usr/bin ahead of /usr/local/bin in your path? I needed to change the path order.
Alternatively, XML 2.3.0 should work, and there is a binary on CRAN. (But some other Omegahat packages seem to need XML >= 2.5.0 without saying so: one is XMLschema on which SSOAP depends. OTOH, quite a few other packages are unhappy with XML 2.5.x.) 


On Sun, 14 Jun 2009, Massimo Di Stefano wrote:


Hi All,
i'm tring to install XML pachage on osx leopard but the build fails with this log : 

* Installing *source* package ‘XML’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /usr/bin/sed
checking for pkg-config... no
checking for xml2-config... /usr/bin/xml2-config
USE_XML2 = yes
SED_EXTENDED_ARG: -E
Minor 6, Patch 16 for 2.6.16
Located parser file -I/usr/include/libxml2/parser.h
Checking for 1.8:  -I/usr/include/libxml2
Using libxml2.*
checking for gzopen in -lz... yes
checking for xmlParseFile in -lxml2... yes
checking for xmlHashSize in -lxml2... yes
Using built-in xmlHashSize
Checking DTD parsing (presence of externalSubset)...
checking for xmlHashSize in -lxml2... yes
Found xmlHashSize
checking for xmlOutputBufferCreateBuffer in -lxml2... no
Using local xmlOutputBufferCreateBuffer. You might think about installing a newer version of libxml2, at least 2.6.23 
checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
checking libxml/xmlversion.h usability... yes
checking libxml/xmlversion.h presence... yes
checking for libxml/xmlversion.h... yes
Expat:  FALSE
Checking for return type of xmlHashScan element routine.
No return value for xmlHashScan
No context field in xmlNs structure.
Checking for cetype_t enumeration
Using recent version of R with cetype_t enumeration type for encoding
checking for xmlsec1-config... no
nodegc default
No XML_WITH_ZLIB enumeration value.

****************************************
Configuration information:

Libxml settings

libxml include directory: -I/usr/include/libxml2
libxml library directory: -L/usr/lib -lxml2 -lz -lpthread -licucore -lm -lz -lxml2 
libxml 2:                 -DLIBXML2=1
Compilation flags: -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 Link flags: -L/usr/lib -lxml2 -lz -lpthread -licucore -lm -lz -lxml2 

****************************************
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/supports.R
config.status: creating inst/scripts/RSXML.csh
config.status: creating inst/scripts/RSXML.bsh
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c DocParse.c -o DocParse.o 
In file included from DocParse.c:13:
Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" 
DocParse.c: In function ‘RS_XML_convertXMLDoc’:
DocParse.c:359: warning: pointer targets in passing argument 2 of ‘CreateCharSexpWithEncoding’ differ in signedness 
DocParse.c: In function ‘RS_XML_xmlNodeChildrenReferences’:
DocParse.c:1197: warning: pointer targets in passing argument 2 of ‘CreateCharSexpWithEncoding’ differ in signedness 
DocParse.c: In function ‘R_findXIncludeStartNodes’:
DocParse.c:1573: warning: passing argument 2 of ‘addXInclude’ from incompatible pointer type gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c EventParse.c -o EventParse.o 
In file included from EventParse.c:15:
Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" 
EventParse.c: In function ‘RS_XML_entityDeclarationHandler’:
EventParse.c:217: warning: pointer targets in passing argument 2 of ‘CreateCharSexpWithEncoding’ differ in signedness 
EventParse.c: In function ‘RS_XML_textHandler’:
EventParse.c:404: warning: pointer targets in assignment differ in signedness gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c ExpatParse.c -o ExpatParse.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c HTMLParse.c -o HTMLParse.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c RSDTD.c -o RSDTD.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c RUtils.c -o RUtils.o 
RUtils.c: In function ‘CreateCharSexpWithEncoding’:
RUtils.c:294: warning: pointer targets in passing argument 2 of ‘xmlStrcmp’ differ in signedness RUtils.c:294: warning: pointer targets in passing argument 2 of ‘xmlStrcmp’ differ in signedness RUtils.c:296: warning: pointer targets in passing argument 2 of ‘xmlStrcmp’ differ in signedness RUtils.c:296: warning: pointer targets in passing argument 2 of ‘xmlStrcmp’ differ in signedness RUtils.c:299: warning: pointer targets in passing argument 1 of ‘Rf_mkChar’ differ in signedness RUtils.c:299: warning: pointer targets in assignment differ in signedness RUtils.c:302: warning: pointer targets in passing argument 1 of ‘Rf_mkCharCE’ differ in signedness gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c Rcatalog.c -o Rcatalog.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c Utils.c -o Utils.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c XMLEventParse.c -o XMLEventParse.o 
In file included from XMLEventParse.c:5:
Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" 
XMLEventParse.c: In function ‘R_processBranch’:
XMLEventParse.c:343: warning: initialization from incompatible pointer type XMLEventParse.c:352: warning: pointer targets in passing argument 3 of ‘xmlSetProp’ differ in signedness 
XMLEventParse.c: In function ‘RS_XML_xmlSAX2StartElementNs’:
XMLEventParse.c:478: warning: pointer targets in passing argument 2 of ‘CreateCharSexpWithEncoding’ differ in signedness 
XMLEventParse.c: In function ‘RS_XML_xmlSAX2EndElementNs’:
XMLEventParse.c:529: warning: pointer targets in passing argument 2 of ‘CreateCharSexpWithEncoding’ differ in signedness XMLEventParse.c:534: warning: pointer targets in passing argument 1 of ‘findEndElementFun’ differ in signedness gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c XMLHashTree.c -o XMLHashTree.o 
XMLHashTree.c: In function ‘makeHashNode’:
XMLHashTree.c:87: warning: pointer targets in passing argument 1 of ‘Rf_mkString’ differ in signedness XMLHashTree.c:99: warning: pointer targets in passing argument 1 of ‘Rf_mkString’ differ in signedness gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c XMLTree.c -o XMLTree.o 
In file included from XMLTree.c:40:
Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" 
XMLTree.c: In function ‘removeNodeNamespaceByName’:
XMLTree.c:245: warning: pointer targets in passing argument 1 of ‘strcmp’ differ in signedness XMLTree.c:254: warning: pointer targets in passing argument 1 of ‘strcmp’ differ in signedness 
XMLTree.c: In function ‘RS_XML_removeNodeNamespaces’:
XMLTree.c:312: warning: pointer targets in passing argument 2 of ‘removeNodeNamespaceByName’ differ in signedness 
XMLTree.c: In function ‘R_insertXMLNode’:
XMLTree.c:506: warning: pointer targets in passing argument 1 of ‘xmlNewText’ differ in signedness 
XMLTree.c: In function ‘R_convertXMLNsRef’:
XMLTree.c:922: warning: pointer targets in passing argument 1 of ‘Rf_mkString’ differ in signedness XMLTree.c:923: warning: pointer type mismatch in conditional expression 
XMLTree.c: In function ‘RS_XML_printXMLNode’:
XMLTree.c:1443: warning: pointer targets in passing argument 1 of ‘Rf_mkChar’ differ in signedness gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/ include/i386 -DLIBXML -I/usr/include/libxml2 - DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 - DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include - fPIC -g -O2 -c libxmlFeatures.c -o libxmlFeatures.o 
libxmlFeatures.c: In function ‘R_getXMLFeatures’:
libxmlFeatures.c:14: error: ‘XML_WITH_THREAD’ undeclared (first use in this function) libxmlFeatures.c:14: error: (Each undeclared identifier is reported only once 
libxmlFeatures.c:14: error: for each function it appears in.)
libxmlFeatures.c:15: error: ‘XML_WITH_TREE’ undeclared (first use inthis function) libxmlFeatures.c:16: error: ‘XML_WITH_OUTPUT’ undeclared (first use in this function) libxmlFeatures.c:17: error: ‘XML_WITH_PUSH’ undeclared (first use inthis function) libxmlFeatures.c:18: error: ‘XML_WITH_READER’ undeclared (first use in this function) libxmlFeatures.c:19: error: ‘XML_WITH_PATTERN’ undeclared (first usein this function) libxmlFeatures.c:20: error: ‘XML_WITH_WRITER’ undeclared (first use in this function) libxmlFeatures.c:21: error: ‘XML_WITH_SAX1’ undeclared (first use inthis function) libxmlFeatures.c:22: error: ‘XML_WITH_FTP’ undeclared (first use in this function) libxmlFeatures.c:23: error: ‘XML_WITH_HTTP’ undeclared (first use inthis function) libxmlFeatures.c:24: error: ‘XML_WITH_VALID’ undeclared (first use in this function) libxmlFeatures.c:25: error: ‘XML_WITH_HTML’ undeclared (first use inthis function) libxmlFeatures.c:26: error: ‘XML_WITH_LEGACY’ undeclared (first use in this function) libxmlFeatures.c:27: error: ‘XML_WITH_C14N’ undeclared (first use inthis function) libxmlFeatures.c:28: error: ‘XML_WITH_CATALOG’ undeclared (first usein this function) libxmlFeatures.c:29: error: ‘XML_WITH_XPATH’ undeclared (first use in this function) libxmlFeatures.c:30: error: ‘XML_WITH_XPTR’ undeclared (first use inthis function) libxmlFeatures.c:31: error: ‘XML_WITH_XINCLUDE’ undeclared (first use in this function) libxmlFeatures.c:32: error: ‘XML_WITH_ICONV’ undeclared (first use in this function) libxmlFeatures.c:33: error: ‘XML_WITH_ISO8859X’ undeclared (first use in this function) libxmlFeatures.c:34: error: ‘XML_WITH_UNICODE’ undeclared (first usein this function) libxmlFeatures.c:35: error: ‘XML_WITH_REGEXP’ undeclared (first use in this function) libxmlFeatures.c:36: error: ‘XML_WITH_AUTOMATA’ undeclared (first use in this function) libxmlFeatures.c:37: error: ‘XML_WITH_EXPR’ undeclared (first use inthis function) libxmlFeatures.c:38: error: ‘XML_WITH_SCHEMAS’ undeclared (first usein this function) libxmlFeatures.c:39: error: ‘XML_WITH_SCHEMATRON’ undeclared (first use in this function) libxmlFeatures.c:40: error: ‘XML_WITH_MODULES’ undeclared (first usein this function) libxmlFeatures.c:41: error: ‘XML_WITH_DEBUG’ undeclared (first use in this function) libxmlFeatures.c:42: error: ‘XML_WITH_DEBUG_MEM’ undeclared (first use in this function) libxmlFeatures.c:43: error: ‘XML_WITH_DEBUG_RUN’ undeclared (first use in this function) libxmlFeatures.c:92: warning: implicit declaration of function ‘xmlHasFeature’ 
make: *** [libxmlFeatures.o] Error 1
ERROR: compilation failed for package ‘XML’
* Removing ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/ library/XML’ 



i also tried to install :

libxml2-sources-2.7.3
using no specific option in configure, just : ./configure make make install (in usr/local) but the log seems to not changes.
need i to add some "configure args" when installing XML pachage in R ? 

[[elided Yahoo spam]]

regards,

Massimo Di Stefano.
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac


--
Brian D. Ripley,                  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595


_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Reply via email to