David,
On Sep 18, 2009, at 17:40 , David Winsemius wrote:
I seem to have some missing or broken parts to my Leopard
installation. After again attempting to install the Gtk+ dmg inked
from the http://r.research.att.com/#other page I get no error. But
attempting to build from source a bioconductor package, Ruuid, I am
again seeing an error
checking for pkg-config... no
You have to set
PATH=/Library/Frameworks/GTK+.framework/Resources/bin:$PATH
if you want to compile GTK+ packages from sources (although that
should not be necessary because BioC provides binaries ...). Also the
choice of compilers can be tricky with GTK+...
Cheers,
Simon
... that I have seen several times before, as well as one which Mark
Morgan on r-help says is due to a missing Gtk+ library.
> source("http://bioconductor.org/biocLite.R";)
> biocLite("Ruuid", type="source")
Using R version 2.9.2, biocinstall version 2.4.12.
Installing Bioconductor version 2.4 packages:
[1] "Ruuid"
Please wait...
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies
= dependencies, :
argument 'lib' is missing: using '/Users/davidwinsemius/Library/R/
2.9/library'
trying URL
'http://bioconductor.org/packages/2.4/bioc/src/contrib/Ruuid_1.22.0.tar.gz'
Content type 'application/x-gzip' length 71857 bytes (70 Kb)
opened URL
==================================================
downloaded 70 Kb
* Installing *source* package ‘Ruuid’ ...
checking for pkg-config... no
checking for glib-config... no
configure: error: No glib package information found
ERROR: configuration failed for package ‘Ruuid’
* Removing ‘/Users/davidwinsemius/Library/R/2.9/library/Ruuid’
* Restoring previous ‘/Users/davidwinsemius/Library/R/2.9/library/
Ruuid’
(I had been able to install the Ruuid package within the 32 bit R
GUI. And I can also build biocLite from source from the 64 bit GUI
without any reported errors.)
What should I be looking for to understand and restore my defective
pkg-config capabilities?
--
David Winsemius, MD
Heritage Laboratories
West Hartford, CT
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