On Feb 10, 2010, at 4:44 PM, Ben Bolker wrote:
Dear R-sig-Mac'ers:
I'm posting on behalf of a student who is having trouble with
accessing the help files in R.app (I think) on MacOS X.4 (I think
X.4.11?) . The basic symptom is that in a clean R session she gets
results like this:
?plot
Error in file(out, "wt") : cannot open the connection
This is generic (i.e. happens with any help request). After a bit
more poking around we triggered
2010-02-09 15:20:21.010 R[16728] *** Exception handlers were not
properly removed. Some code has jumped or returned out of an
NS_DURING...NS_HANDLER region without using the NS_VOIDRETURN or
NS_VALUERETURN macros.
R(16728,0xa000ed88) malloc: *** error for object 0x3b610038:
Non-aligned pointer being freed
R(16728,0xa000ed88) malloc: *** set a breakpoint in szone_error to
debug
R(16728,0xa000ed88) malloc: *** Deallocation of a pointer not
malloced: 0x41d60; This could be a double free(), or free() called
with the middle of an allocated block; Try setting environment
variable MallocHelp to see tools to help debug
We have both tried searching/googling for this particular problem,
without success -- found a fair amount about issues with help.start()
when running firewalls, but nothing that seemed to match our
situation.
* Does this ring any bells for anyone? Have we missed something
obvious (I hope)? What are the next steps in the
diagnostic/troubleshooting pathway?
* Is there a searchable version of the R-sig-mac archives?
Rsitesearch doesn't seem to offer it, and the R-sig-mac archives
seem to
be available only month-by-month (& not searchable), as far as I can
tell.
You can dummy up a search function for the r-sig-mac archives by using
the Google advanced search with the domain name restricted to:
https://stat.ethz.ch/pipermail/r-sig-mac/
http://www.google.com/search?hl=en&as_q=hekp+problems&as_epq=&as_oq=&as_eq=&num=10&lr=&as_filetype=&ft=i&as_sitesearch=https%3A%2F%2Fstat.ethz.ch%2Fpipermail%2Fr-sig-mac%2F&as_qdr=all&as_rights=&as_occt=any&cr=&as_nlo=&as_nhi=&safe=images
I'm pretty sure that Gmane also archives r-sig-mac and I noticed that
is what the BioConductor page refers people to for their list.
thanks,
Ben Bolker
sessionInfo()
R version 2.10.1 (2009-12-14)
powerpc-apple-darwin8.11.1
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
loaded via a namespace (and not attached):
[1] tools_2.10.1
--
Ben Bolker
Associate professor, Biology Dep't, Univ. of Florida
bol...@ufl.edu / people.biology.ufl.edu/bolker
GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
David Winsemius, MD
Heritage Laboratories
West Hartford, CT
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
