After installing Xcode again (3.2.1) I get the new error when building from the
source posted on CRAN
$ R CMD INSTALL crawl_1.1-0.tar.gz
* installing to library /Users/johnsond/Library/R/
* installing *source* package crawl ...
** libs
** arch - i386
gfortran-4.2 -arch i386 -fno-common -mtune=core2 -g -O2 -c crwDriftN2ll.f90
-o crwDriftN2ll.o
crwDriftN2ll.f90:0: error: bad value (core2) for -mtune= switch
make: *** [crwDriftN2ll.o] Error 1
ERROR: compilation failed for package crawl
* removing /Users/johnsond/Library/R//crawl
* restoring previous /Users/johnsond/Library/R//crawl
Is there something else that disappeared with my upgrade to SL? Or is this now
a gfortran problem?
Best wishes,
Devin
On Mar 29, 2010, at 2:18 PM, Simon Urbanek wrote:
>
> On Mar 29, 2010, at 16:45 , Devin Johnson wrote:
>
>> Hi,
>> I have a problem compiling/installing a package that has fortran source code
>> in it. I've compiled earlier versions of this package many times in the past
>> as I've worked on it, but, now it's failing to install. I've recently go
>> through an upgrade to snow leopard and installation/migration of my home
>> directory for networking purposes at work (use AdmitMac with a domain
>> account). I'm not sure which one of these might be causing the issue.
>> Everything was fine before this. Here's the error:
>>
>> $ R CMD INSTALL crawl
>>
>> * installing to library /Users/johnsond/Library/R/
>> * installing *source* package crawl ...
>> ** libs
>> ** arch - i386
>> sh: make: command not found
>
> Please see the FAQ - you don't even have Xcode installed.
>
> Cheers,
> Simon
>
>
>
>> ERROR: compilation failed for package crawl
>> * removing /Users/johnsond/Library/R//crawl
>> * restoring previous /Users/johnsond/Library/R//crawl
>>
>>
>> Here's the gfortran version:
>>
>> $ gfortran --version
>> GNU Fortran (GCC) 4.2.3
>> Copyright (C) 2007 Free Software Foundation, Inc.
>>
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>>
>> $ which gfortran
>> /usr/local/bin/gfortran
>>
>> The package ("crawl") is currently on CRAN and when I download the source, I
>> get the same message. I've tried reinstalling R 2.10.1, gfortran 2.4.3, and
>> poking around where I could, but I'm at a loss for what to check next. Any
>> help would be greatly appreciated.
>>
>>
>> ----------------------------------------------------------
>> Devin S. Johnson, Ph.D.
>> Statistician
>> NOAA National Marine Mammal Laboratory
>> 7600 Sand Point Way NE
>> Seattle, WA 98115
>> Phone: (206) 526-6867
>> Fax: (206) 526-6115
>> Email: devin.john...@noaa.gov
>> ----------------------------------------------------------
>>
>>
>>
>>
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac@stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
----------------------------------------------------------
Devin S. Johnson, Ph.D.
Statistician
NOAA National Marine Mammal Laboratory
7600 Sand Point Way NE
Seattle, WA 98115
Phone: (206) 526-6867
Fax: (206) 526-6115
Email: devin.john...@noaa.gov
----------------------------------------------------------
[[alternative HTML version deleted]]
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