Dear Simon,
My package is "xps" which has always worked on Tiger and also on
Leopard, thus I am shocked that it does not work on Snow Leopard. The
problem is not only that I cannot do "R32 CMD check xps-1.9.0.tar.gz"
which results in the error message mentioned, but that the binary which
I have downloaded using "biocLite("xps")" gives me the same error message.
When I start "R32" which I need to do since I have compiled the ROOT
framework for 32 bit, I get:
> library(xps)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/Users/rabbitus/Library/R/2.11/library/xps/libs/i386/xps.so':
dlopen(/Users/rabbitus/Library/R/2.11/library/xps/libs/i386/xps.so,
6): Library not loaded: @rpath/libCore.so
Referenced from:
/Users/rabbitus/Library/R/2.11/library/xps/libs/i386/xps.so
Reason: no suitable image found. Did find:
/Volumes/CoreData/ROOT/root/lib/libCore.so: mach-o, but wrong
architecture
/Volumes/CoreData/ROOT/root/lib/libCore.so: mach-o, but wrong
architecture
Error: package/namespace load failed for 'xps'
At the moment I have no idea what might be the reason for this:-(
Best regards
Christian
On 4/28/10 11:38 PM, Simon Urbanek wrote:
On Apr 28, 2010, at 5:22 PM, cstrato wrote:
Dear all,
Last week I have installed on my MacBook Pro Snow Leopard 10.6.3 and downloaded
from Apple Xcode 3.2.2. Then I have installed R-2.11.0.pkg for Mac OS X 10.5
(Leopard) and higher.
Now I wanted to run R CMD check for my BioC package which contains C++ code but
got the following error:
installing to /Volumes/CoreData/CRAN/xps.Rcheck/xps/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/Volumes/CoreData/CRAN/xps.Rcheck/xps/libs/i386/xps.so':
dlopen(/Volumes/CoreData/CRAN/xps.Rcheck/xps/libs/i386/xps.so, 6): no
suitable image found. Did find:
/Volumes/CoreData/CRAN/xps.Rcheck/xps/libs/i386/xps.so: mach-o, but
wrong architecture
ERROR: loading failed
* removing '/Volumes/CoreData/CRAN/xps.Rcheck/xps'
Do you have any hint what might be the reason for this error?
Apparently the R and your package have different architectures. The reason is
most likely your package - often badly written Makevars or Makefile if some
dependencies are used, or stale object files in the sources (failure to clean
up) etc. You'd have to show us the package and exactly how you're trying to
instal it if we are to help you further.
As far as I understand this message means that Snow Leopard is the wrong
architecture, why?
You understand the message incorrectly - it tells you the R (which is the one loading the
package) cannot find binary of the same architecture in the package, but it can find
another, different, architecture instead. "Snow Leopard" is not an architecture
it's an operating system.
Cheers,
Simon
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