Hello List Members!
I tried to convert a tree of class phylo to class phylo4
The tree
str(tr)
List of 5
$ edge : int [1:591, 1:2] 298 298 298 299 300 300 301 302 303
303 ...
$ Nnode : int 295
$ tip.label : chr [1:297] "Baloskion_tetraphyllum"
"Sporodanthus_tasmanicus" "Anthochortus_crinalis"
"Anthochortus_graminifolius" ...
$ edge.length: num [1:591] 1.598 1.006 0.476 0.524 0.475 ...
$ node.label : chr [1:295] "" "1.00" "1.00" "1.00" ...
- attr(*, "class")= chr "phylo"
- attr(*, "origin")= chr "/Users/birgitlemcke/Job/Doktorarbeit/
workspace//Users/birgitlemcke/Desktop/Birgits-folder/
ConsAllNodesMrBayes.tre"
the error message
tr <- as(tr, "phylo4")
Fehler in checkTree(object) : All labels must be unique
Error in checkTree(object) : All labels must be unique
checking tip labels
length(unique(tr$tip.label))==length((tr$tip.label))
[1] TRUE
Does somebody have an idea what the problem is?
The weird thing is that I am pretty sure that I did the same already
also with the same data.I feel somewhat helpless.
Many thanks for answers in advance
Cheers
Birgit
=============================
Birgit Lemcke
Institut of Systematic Botany
University of Zurich
Zollikerstrasse 107
CH-8008 Zürich
Switzerland
Ph: +41 (0)44 634 8416
mail: birgit.lem...@systbot.uzh.ch
=============================
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