Hi everyone,
I am simulating characters evolving in a phylogetic tree under a number of
models and using those characters to build another tree using parsimony.
I would like, then, to measure how similar are the recovered trees when
compared to the original ones, taking only topology into account. Is there
any function in the R packages to calculate tree distance metrics? I
considered using TNT (the program that I am using to build phylogenies) to
calculate SPR distances, but it would be much more convenient if there were
a way of doing it in R.
Thanks in advance,
Bruno
--
Bruno A. S. de Medeiros
PhD Student - Farrell Lab
Harvard University
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