Dear Vojtěch, You may have a look at the following packages: - handling microsat data / distance related things / clustering: adegenet - amova: pegas - Bayesian clustering: Geneland (spatial clustering)
Cheers Thibaut ________________________________________ From: r-sig-phylo-boun...@r-project.org [r-sig-phylo-boun...@r-project.org] on behalf of Vojtěch Zeisek [vojtech.zei...@opensuse.org] Sent: 07 November 2012 15:37 To: mailinglist R Subject: [R-sig-phylo] Microsatellites Hello, could someone, please, point me to some manual, where I can learn how to work with microsatellite data in R. I have big matrix of individuals and lengths of respective alleles and I'd like to count genetic distances among individuals, AMOVA, visualize data using PCoA, perform Bayesian clustering, count correlation of genetic and geographical distance and so on. Thank You in advance! All the best, Vojtěch -- Vojtěch Zeisek Komunita openSUSE GNU/Linuxu Community of the openSUSE GNU/Linux http://www.opensuse.org/ http://trapa.cz/ _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
