Hi Daniel, You may want to try to change the options with phylobase:
phylobase.options(allow.duplicated.labels="ok") and then try reading your tree. Feel free to send me your tree if needed. cheers, -- François On Fri, Aug 29, 2014 at 10:42 PM, Daniel Rafael Miranda-Esquivel < dmiran...@gmail.com> wrote: > Dear all, > > I tried to read a tree like this: > > #NEXUS > begin trees ; > tree tagged_tree = [&U] > (A,(B,(C,D)60)100); > > end ; > > using read.nexus; while figtree reads it, ape refuses, telling that > there is an error: > > Error in start:end : NA/NaN argument > > I tried readNexus in phylobase, but there is a problem reading the > labels (in the real tree, not in this example), as the program > complains that a label is duplicated. > > > I will be grateful for any tip to solve this problem, > > > All the best, > > > Daniel > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
