Hi Liam, perfect! Your right, I didn't realize that some species were duplicated. Great to have the option in phytools!
All the best, Jonas 2015-03-05 17:16 GMT+01:00 Liam J. Revell <liam.rev...@umb.edu>: > Hi Jonas. > > I thought of the same thing. Unfortunately, one thing that I discovered is > that because R automatically adds 4% or so to the plotting range, you will > find that species & edges near the bottom of one page will also appear at > the top of the next page. If you test your code & look for species or edges > near the bottom or top of each page, you may find what I did. > > I have posted a solution to this here: http://blog.phytools.org/2015/ > 03/splitting-tree-over-mutiple-plotting.html. It uses plotTree from > phytools internally, but it could fairly easily be modified to use other > tree plotters such as plot.phylo or plotSimmap. > > All the best, Liam > > Liam J. Revell, Assistant Professor of Biology > University of Massachusetts Boston > web: http://faculty.umb.edu/liam.revell/ > email: liam.rev...@umb.edu > blog: http://blog.phytools.org > > On 3/5/2015 5:19 AM, Jonas Eberle wrote: > >> MultipagePhyloPlot <- function (tree, npages = 5) { >> ntips <- length(tree$tip.label) >> tips.per.page <- ntips / npages >> y1 <- ntips - tips.per.page >> y2 <- ntips >> for (i in 1:npages) { >> plot.phylo(tree, y.lim = c(y1, y2)) >> y1 <- y1 - tips.per.page >> y2 <- y2 - tips.per.page >> } >> } >> > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
