Thank you François, I was trying to use consensus() from ape, but when I try to write a nexus file I get an error message:
> trees<-read.nexus("1000_trees.nex") > consensus(trees,p=1,check.labels=TRUE) > write.nexus(my_tree,"consensus_birds.nex") #NEXUS [R-package APE, Wed Jul 15 14:49:14 2015] BEGIN TAXA; DIMENSIONS NTAX = 59; TAXLABELS Rhynchotus_rufescens Apteryx_haastii Dromaius_novaehollandiae (...) ; END; BEGIN TREES; TRANSLATE Error in y$tip.label : $ operator is invalid for atomic vectors My only problem now is to create the file. I'm going to try the softwares you pointed. Best regards, Sérgio. ᐧ 2015-07-15 14:49 GMT+01:00 François Michonneau < francois.michonn...@gmail.com>: > Hi Sergio, > > Not in R, but you can use PAUP, MrBayes or Dendropy (my recommendation). > > Cheers, > -- François > > 2015-07-15 7:53 GMT-04:00 Sergio Ferreira Cardoso > <sff.card...@campus.fct.unl.pt>: > > Dear all, > > > > I have a nexus file with 1000 trees on it with divergence times as branch > > lengths. Does anyone know about a package that can make a consensus tree > > out of my 1000 trees? > > Thanks in advance. > > > > Best regards, > > Sérgio. > > > > -- > > Com os melhores cumprimentos, > > Sérgio Ferreira Cardoso. > > > > -------------------- > > > > Best regards, > > Sérgio Ferreira Cardoso > > > > > > > > > > MSc. Paleontology candidate > > Departamento de Ciências da Terra - FCT /Universidade Nova de Lisboa > > Geociências - Universidade de Évora > > > > Lisboa, Portugal > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-sig-phylo mailing list - R-sig-phylo@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > -- Com os melhores cumprimentos, Sérgio Ferreira Cardoso. -------------------- Best regards, Sérgio Ferreira Cardoso MSc. Paleontology candidate Departamento de Ciências da Terra - FCT /Universidade Nova de Lisboa Geociências - Universidade de Évora Lisboa, Portugal [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/