Someone thought I having difficulties in MrBayes, but the point I need help is in R and not in MrBayes.... Thanks
Felipe Rossetto Herbário FUEL Departamento de Biologia Animal e Vegetal Universidade Estadual de Londrina Rodovia Celso Garcia Cid, PR 445 Km 380, Campus Universitário Caixa postal 10.011 CEP: 86057-970 Londrina, Paraná, Brasil CV: http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4211230P7 2015-08-26 11:16 GMT-03:00 Felipe Rossetto <rossetto.fel...@gmail.com>: > Hi there, > I'm using R for creating a consensus tree of non discarded burn-in trees, > and I used the MrBayes .t file for it. But The consensus is unrooted, and I > have 3 species as outgroup, and I'm not having sucess in root the tree with > these 3 outgroups (species from the same genus), and when I root it with > only one species, the outgroup is paraphyletic and it is not true. So my > questions are: (1) Is here a command for forcing a monophyly of the > outgroup? (2) Is there a command for exporting this consesus tree with the > PP values? > > Many thanks in advance > > Felipe Rossetto > Herbário FUEL > Departamento de Biologia Animal e Vegetal > Universidade Estadual de Londrina > Rodovia Celso Garcia Cid, PR 445 Km 380, Campus Universitário > Caixa postal 10.011 > CEP: 86057-970 > Londrina, Paraná, Brasil > CV: http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4211230P7 > > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
