Hi Jacob, You might want to check Joseph Heled's python package biopy (https://code.google.com/p/biopy), I know it has some simulation capabilities. Also check Z. Yang's program MCMCcoal, I know some people have used it for simulation analyses in BPP.
Cheers, Santiago Sent from my iPhone _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/