Hi Franz, It is implemented in BayesTraits ( http://www.evolution.rdg.ac.uk/BayesTraits.html). I know it's not R, and it's a command line based program, so might take a while to get used to, but BayesTraits is really powerful (and it's Bayesian!)
thanks, Manabu On 14 June 2016 at 09:58, mailbox Franz <f.k...@mailbox.org> wrote: > Hi everybody, > > does anyone know if the bayesian version of Pagels 94 Method of correlated > binary traits is implemented in R somewhere? > There is the corHMM package which implements a 3-state ML version of it, > but I couldn’t find a Baysian version anywhere. > > So I search for a Bayesian version of a 2 or 3 binary state correlated > evolution method (preferably in R). > > The Paper I refer to is: > > http://www.ncbi.nlm.nih.gov/pubmed/16685633 > > All the best, > Franz > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Manabu Sakamoto, PhD manabu.sakam...@gmail.com [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
