Hello, if onlythe readibility of the labels is the issue, what about using svg() function? It produces a SVG file which You can open in almost any vector editor (like Inkscape) andmove the labels around. Chech ?svg for possible settings and play with them little bit. They vary among operating systems. So You can do something like svg(...) # Any parameters inside, at least output file name # All the tree ploting commands... dev.off() # To save the SVG file to the disc Check also parameters of function tip.labels() - You can specify font size or replace the text with some symbol. (Sorry for being so brief, I don't have exact examples handy) Yours, V.
31. srpna 2016 11:11:33 CEST, "Bhuller, Ravneet" <ravneet.bhulle...@imperial.ac.uk> napsal: >Dear All, > >I am trying to construct a phylogenetic tree (neighbour joining) using >either APE or PHANGORN in R. But, since I have got 220 strains of >bacteria in my data, the resulted tree is not very clear. The branch >labels are so much overlapping that they cannot be read at all. Is >there any way, I can get a neat tree with clearly read labels? Any >guidance will be very much appreciated. > >Regards, > >Rav -- Vojtěch Zeisek http://trapa.cz/cs _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
