Dear Guangchuang,
Wouldn't that require that the distance between root and current time is, at most, 0.05 (= 0.1 /2) ? In that case, I believe you just need to rescale the tree you simulated. That can be done in a number of way according to which package you use, e.g., in phytool: pbtree(n=1000,scale=0.05) Best, Giulio Valentino Dalla Riva Beaty Biodiversity Research Centre University of British Columbia Vancouver, Canada ________________________________ From: R-sig-phylo <r-sig-phylo-boun...@r-project.org> on behalf of Yu, Guangchuang <g...@connect.hku.hk> Sent: November 3, 2016 5:02:25 AM To: r-sig-phylo@r-project.org Subject: [R-sig-phylo] simulate tree by specifying taxa distance Dear all, I want to simulate tree with restricted taxa distances (e.g. all taxa distance should be less than 0.1). Is there any R package can do this? Best wishes, Guangchuang -- --~--~---------~--~----~------------~-------~--~----~ Guangchuang Yu, PhD Candidate State Key Laboratory of Emerging Infectious Diseases School of Public Health The University of Hong Kong Hong Kong SAR, China www: https://guangchuangyu.github.io -~----------~----~----~----~------~----~------~--~--- [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
