Hello all, I'm using the R package 'ape' to make non-ultrametric phylogenetic trees . I want to align tip labels together when drawing a tree with plot.phylo(), and also add on more labels using the tiplabels() function. But, I can't get additional tip labels from tiplabels aligned properly with those from plot.phylo. When I call tiplabels, the labels are being drawn at the true edge length instead of neatly around the plot with the tip labels drawn by plot.phylo. So, in the plot below, I want the tip labels (circles) to be aligned adjacent to the tip labels (names) drawn by plot.phylo.
Good: tips like t30, t31, and t2 Bad: tips like t1, t20, and t21 Can anyone help me out? Below is the code to produce the tree above. I'm using ape version 5.1 and R version 3.4.3. library(ape) set.seed(31) sim_tree <- rlineage(0.1, 0.05) plot.phylo(sim_tree, type = "fan", align.tip.label = TRUE) tiplabels(pch = 19, col = rainbow(3), offset = 6) Thanks all! *Nick Carleson* PhD Student * | Oregon State University *Graduate Research Assistant | *Botany and Plant Pathology*
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