Dear all,
I'm surprised I could not find a simple function to do this in any of the
packages I know. I just want to take a tree with node labels (e.g.
bootstrap values from a RAxML analysis) and collapse all nodes with support
values below, say, 90%. I tried to do this recursively using
collapse.to.star in phytools, but node numbers change after the first
collapsed node and my indexing gets completely off.
with best regards,
Karla
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