Dear all, I'm surprised I could not find a simple function to do this in any of the packages I know. I just want to take a tree with node labels (e.g. bootstrap values from a RAxML analysis) and collapse all nodes with support values below, say, 90%. I tried to do this recursively using collapse.to.star in phytools, but node numbers change after the first collapsed node and my indexing gets completely off.
with best regards, Karla [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/