For `ape::dist.nodes()`, how can one match the output matrix rows/columns with the node IDs in the tree (eg., the tip.labels)? I cannot just use `ape::cophenetic()` in my particular situation. The docs for `ape::dist.nodes()` state:
``` … in the case of dist.nodes, the numbers of the tips and the nodes (as given by the element edge). ``` … but tree$edge doesn’t provide any direct info about which nodes are internal vs external and how the external tip labels map to the tree$edge matrix. Thanks, Nick _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
