Dear experts in phylogenetic comparative methods, When I ran the fitMk function from phytools (actually the fitMk.parallel I was using), I got a message saying "R thinks optimization may not have converged”.
Would this be a problem if I continue to use the Qmatrix generated by fitMk for downstream analysis such as simmap? Or how can I fix this by letting the function run longer until it finds a better solution? Thank you very much in advance! Kind regards Ting-Wen -- Ph.D. Ting-Wen Chen Animal Ecology (AG Scheu) J.F. Blumenbach Institute of Zoology and Anthropology Georg August Universität Göttingen Untere Karspüle 2 D-37073 Göttingen, Germany https://www.uni-goettingen.de/en/348915.html [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
