On Tue, Feb 8, 2011 at 1:55 PM, Dirk Eddelbuettel <e...@debian.org> wrote:
> On 8 February 2011 at 13:42, Douglas Bates wrote: > | I'm back to "it's not your night, kid". I seem to be unable to > | install the RcppArmadillo package under Ubuntu 10.10 with R-2.12.1 > | installed from the packages on CRAN. The compilation goes fine but > | the package can't be loaded because the symbol > | arma::arma_version::major is undefined. It should have been defined > | as a static unsigned int in > | RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp and is > | indeed used in RcppArmadillo/src/RcppArmadillo.cpp. The output from > | the attempted installation is enclosed. > What does ldd say when you point at .so file that fails to load? Do you > maybe have an old .deb package for Armadillo hanging around? The ldd output is linux-vdso.so.1 => (0x00007fffcddff000) libRcpp.so => /home/bates/R/x86_64-pc-linux-gnu-library/2.12/Rcpp/lib/libRcpp.so (0x00007fea656ee000) liblapack.so.3gf => /usr/lib/liblapack.so.3gf (0x00007fea64ab8000) libblas.so.3gf => /usr/lib/libblas.so.3gf (0x00007fea64573000) libgfortran.so.3 => /usr/lib/libgfortran.so.3 (0x00007fea6428f000) libR.so => /usr/lib/libR.so (0x00007fea63d30000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007fea63a29000) libm.so.6 => /lib/libm.so.6 (0x00007fea637a6000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007fea63590000) libc.so.6 => /lib/libc.so.6 (0x00007fea6320c000) libpthread.so.0 => /lib/libpthread.so.0 (0x00007fea62fef000) libreadline.so.6 => /lib/libreadline.so.6 (0x00007fea62dae000) libpcre.so.3 => /lib/libpcre.so.3 (0x00007fea62b7c000) liblzma.so.2 => /usr/lib/liblzma.so.2 (0x00007fea6295a000) libbz2.so.1.0 => /lib/libbz2.so.1.0 (0x00007fea62749000) libz.so.1 => /lib/libz.so.1 (0x00007fea62530000) libdl.so.2 => /lib/libdl.so.2 (0x00007fea6232c000) /lib64/ld-linux-x86-64.so.2 (0x00007fea65b96000) libncurses.so.5 => /lib/libncurses.so.5 (0x00007fea620e8000) but armadillo shouldn't show up in ldd because it is only headers, right? The output of nm -g applied to that shared object does list the major, minor and patch members of the arma_version struct but has them as undefined U _ZN4arma12arma_version5majorE U _ZN4arma12arma_version5minorE U _ZN4arma12arma_version5patchE I checked and I don't have any of the Ubuntu packages associated with armadillo installed. I really don't know what is going on. > Needless to say, it all works here on the same platform. I also ran R CMD > check on both the most recent release and the svn head (which may still be > identical). > > > edd@max:~/svn/rcpp/pkg$ lsb_release -ricd > Distributor ID: Ubuntu > Description: Ubuntu 10.10 > Release: 10.10 > Codename: maverick > edd@max:~/svn/rcpp/pkg$ R CMD INSTALL releases/RcppArmadillo_0.2.11.tar.gz > * installing to library ‘/usr/local/lib/R/site-library’ > * installing *source* package ‘RcppArmadillo’ ... > ** libs > ccache g++ -I/usr/share/R/include > -I"/usr/local/lib/R/site-library/Rcpp/include" -I../inst/include -fpic -g > -O3 -Wall -pipe -pedantic -Wno-variadic-macros -c RcppArmadillo.cpp -o > RcppArmadillo.o > ccache g++ -I/usr/share/R/include > -I"/usr/local/lib/R/site-library/Rcpp/include" -I../inst/include -fpic -g > -O3 -Wall -pipe -pedantic -Wno-variadic-macros -c fastLm.cpp -o fastLm.o > g++ -shared -o RcppArmadillo.so RcppArmadillo.o fastLm.o > -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp > -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib -llapack -lblas -lgfortran > -lm -L/usr/lib64/R/lib -lR > installing to /usr/local/lib/R/site-library/RcppArmadillo/libs > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices ... > ** testing if installed package can be loaded > > * DONE (RcppArmadillo) > edd@max:~/svn/rcpp/pkg$ R CMD INSTALL RcppArmadillo/ > * installing to library ‘/usr/local/lib/R/site-library’ > * installing *source* package ‘RcppArmadillo’ ... > ** libs > ccache g++ -I/usr/share/R/include > -I"/usr/local/lib/R/site-library/Rcpp/include" -I../inst/include -fpic -g > -O3 -Wall -pipe -pedantic -Wno-variadic-macros -c RcppArmadillo.cpp -o > RcppArmadillo.o > ccache g++ -I/usr/share/R/include > -I"/usr/local/lib/R/site-library/Rcpp/include" -I../inst/include -fpic -g > -O3 -Wall -pipe -pedantic -Wno-variadic-macros -c fastLm.cpp -o fastLm.o > g++ -shared -o RcppArmadillo.so RcppArmadillo.o fastLm.o > -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp > -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib -llapack -lblas -lgfortran > -lm -L/usr/lib64/R/lib -lR > installing to /usr/local/lib/R/site-library/RcppArmadillo/libs > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices ... > ** testing if installed package can be loaded > > * DONE (RcppArmadillo) > edd@max:~/svn/rcpp/pkg$ > > > Dirk > > -- > Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com > _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel