Hi Dirk, Thanks for your reply, we indeed have a mismatch in the wt version. I am using wt version 3.2.0 with boost 1.47.0. I tried to compile wt from sources using version 3.2.10 but it fails due a variable used in wt not defined in my version of boost. Therefore I am going to investigate on the wt side as suggested.
To the list : Has anybody tried the wt example with wt version 3.2.0? Thanks, Cedric * Dirk Eddelbuettel <[email protected]> [2012-02-28 09:54:49 -0600]: > > Hi Cedric, > > Thanks for posting here. I'll reply to post email in this one. > > On 28 February 2012 at 16:09, GOUY-PAILLER Cedric wrote: > | Dear list, > | > | I am trying to use the wt example provided in RInside. The sources have > | just been downloaded from the svn : > | > | ~ svn checkout svn://svn.r-forge.r-project.org/svnroot/rinside/ > | ~ cd rinside/pkg/inst/examples/wt > | > | then it compile without problem > | ~ make > | g++ -Wall -I/usr/local/include > | > -I/home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/include > | -I/home/cedric/local/R/library/Rcpp/include > | -I/home/cedric/local/R/library/RInside/include -march=native -O2 -o > | wtdensity wtdensity.cpp > | -L/home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/lib > | -lR -lmkl_blas95_lp64 -lmkl_lapack95_lp64 -Wl,--start-group > | > /home/cedric/local/intel/composer_xe_2011_sp1.7.256/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_gf_lp64.a > | > /home/cedric/local/intel/composer_xe_2011_sp1.7.256/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_gnu_thread.a > | > /home/cedric/local/intel/composer_xe_2011_sp1.7.256/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.a > | -Wl,--end-group -fopenmp -lpthread > | -L/home/cedric/local/R/library/Rcpp/lib -lRcpp > | -Wl,-rpath,/home/cedric/local/R/library/Rcpp/lib > | -L/home/cedric/local/R/library/RInside/lib -lRInside > | -Wl,-rpath,/home/cedric/local/R/library/RInside/lib -lwt -lwthttp > | -lboost_signals > | strip wtdensity > > Looks similar to what I get -- though I don't use the MKL here. Should not > matter, but one never knows. > > | and the start seems ok : > | ~ make run > | test -L resources || ln -s /usr/share/Wt/resources . > | ./wtdensity --docroot ".;/resources,/tmp" --http-addr 127.0.0.1 --http-port > 8080 > | [2012-Feb-28 16:05:51.301507] 27353 - [info] "config: reading Wt config > file: /etc/wt/wt_config.xml (location = './wtdensity')" > | [2012-Feb-28 16:05:51.302307] 27353 - [info] "WServer/wthttp: initializing > built-in wthttpd" > | [2012-Feb-28 16:05:51.302649] 27353 - [info] "wthttp: started server: > http://127.0.0.1:8080"; > | > | but when I am trying to access the page from firefox, the result is an > | error: > | [2012-Feb-28 15:09:07.246133] 25770 - [info] "Wt: Session created > (#sessions = 1)" > | [2012-Feb-28 15:09:07.246384] 25770 [/ P4TTewoFpMGVLWzg] [info] > "WEnvironment: UserAgent: Mozilla/5.0 (X11; Linux x86_64; rv:10.0.1) > Gecko/20100101 Firefox/10.0.1" > | 127.0.0.1 - - [2012-Feb-28 15:09:07.247232] "GET / HTTP/1.1" 200 1743 > | [2012-Feb-28 15:09:07.247276] 25770 - [info] "WebRequest: took 1.317ms" > | Error: C stack usage is too close to the limit > | Execution halted > | *** glibc detected *** ./wtdensity: double free or corruption (out): > | 0x00007f1e41d2a2c0 *** > | ======= Backtrace: ========= > | /lib64/libc.so.6(+0x76155)[0x7f1e5068f155] > | /lib64/libc.so.6(cfree+0x6c)[0x7f1e5069408c] > | > /usr/lib64/libboost_thread-mt-1_47.so.1.47.0(_ZN5boost6detail12set_tss_dataEPKvNS_10shared_ptrINS0_20tss_cleanup_functionEEEPvb+0x56)[0x7f1e4f171e16] > | > /usr/lib64/libwt.so.31(_ZN5boost19thread_specific_ptrIN2Wt10WebSession7HandlerEED1Ev+0x2f)[0x7f1e51ce742f] > | /lib64/libc.so.6(__cxa_finalize+0xa5)[0x7f1e50651785] > | /usr/lib64/libwt.so.31(+0x1e6876)[0x7f1e51a0b876] > | ======= Memory map: ======== > | 00400000-0040e000 r-xp 00000000 08:03 474889 > | /home/cedric/tmp/rinside/pkg/inst/examples/wt/wtdensity > | 0060e000-0060f000 r--p 0000e000 08:03 474889 > | /home/cedric/tmp/rinside/pkg/inst/examples/wt/wtdensity > | 0060f000-00610000 rw-p 0000f000 08:03 474889 > | /home/cedric/tmp/rinside/pkg/inst/examples/wt/wtdensity > | 01dad000-03789000 rw-p 00000000 00:00 0 > | [heap] > | 7f1e3c000000-7f1e3c021000 rw-p 00000000 00:00 0 > | 7f1e3c021000-7f1e40000000 ---p 00000000 00:00 0 > | 7f1e4152b000-7f1e4152c000 ---p 00000000 00:00 0 > | 7f1e4152c000-7f1e41d2c000 rwxp 00000000 00:00 0 > | 7f1e41d2c000-7f1e41d2d000 ---p 00000000 00:00 0 > | 7f1e41d2d000-7f1e4252d000 rwxp 00000000 00:00 0 > | 7f1e4252d000-7f1e4252e000 ---p 00000000 00:00 0 > | 7f1e4252e000-7f1e42d2e000 rwxp 00000000 00:00 0 > | 7f1e42d2e000-7f1e42d2f000 ---p 00000000 00:00 0 > | 7f1e42d2f000-7f1e4352f000 rwxp 00000000 00:00 0 > | 7f1e4352f000-7f1e43530000 ---p 00000000 00:00 0 > | 7f1e43530000-7f1e43d30000 rwxp 00000000 00:00 0 > | 7f1e43d30000-7f1e43d31000 ---p 00000000 00:00 0 > | 7f1e43d31000-7f1e44531000 rwxp 00000000 00:00 0 > | 7f1e44531000-7f1e44532000 ---p 00000000 00:00 0 > | 7f1e44532000-7f1e44d32000 rwxp 00000000 00:00 0 > | 7f1e44d32000-7f1e44d33000 ---p 00000000 00:00 0 > | 7f1e44d33000-7f1e45533000 rwxp 00000000 00:00 0 > | 7f1e45533000-7f1e45534000 ---p 00000000 00:00 0 > | 7f1e45534000-7f1e45d34000 rwxp 00000000 00:00 0 > | 7f1e45d34000-7f1e45d35000 ---p 00000000 00:00 0 > | 7f1e45d35000-7f1e46535000 rwxp 00000000 00:00 0 > | 7f1e46535000-7f1e4657a000 r-xp 00000000 08:03 3523080 > | /home/cedric/local/R/library/Rcpp/libs/Rcpp.so > | 7f1e4657a000-7f1e46779000 ---p 00045000 08:03 3523080 > | /home/cedric/local/R/library/Rcpp/libs/Rcpp.so > | 7f1e46779000-7f1e4677b000 r--p 00044000 08:03 3523080 > | /home/cedric/local/R/library/Rcpp/libs/Rcpp.so > | 7f1e4677b000-7f1e4677c000 rw-p 00046000 08:03 3523080 > | /home/cedric/local/R/library/Rcpp/libs/Rcpp.so > | 7f1e4677c000-7f1e46781000 rw-p 00000000 00:00 0 > | 7f1e46781000-7f1e4680f000 r-xp 00000000 08:03 3272793 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/stats/libs/stats.so > | 7f1e4680f000-7f1e46a0e000 ---p 0008e000 08:03 3272793 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/stats/libs/stats.so > | 7f1e46a0e000-7f1e46a10000 r--p 0008d000 08:03 3272793 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/stats/libs/stats.so > | 7f1e46a10000-7f1e46a17000 rw-p 0008f000 08:03 3272793 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/stats/libs/stats.so > | 7f1e46a17000-7f1e46b4a000 rw-p 00000000 00:00 0 > | 7f1e46b4a000-7f1e46b77000 r-xp 00000000 08:03 3107417 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/grDevices/libs/grDevices.so > | 7f1e46b77000-7f1e46d77000 ---p 0002d000 08:03 3107417 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/grDevices/libs/grDevices.so > | 7f1e46d77000-7f1e46d78000 r--p 0002d000 08:03 3107417 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/grDevices/libs/grDevices.so > | 7f1e46d78000-7f1e46d79000 rw-p 0002e000 08:03 3107417 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/grDevices/libs/grDevices.so > | 7f1e46fcf000-7f1e470d4000 rw-p 00000000 00:00 0 > | 7f1e470d4000-7f1e470db000 r-xp 00000000 08:03 3985139 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/methods/libs/methods.so > | 7f1e470db000-7f1e472da000 ---p 00007000 08:03 3985139 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/methods/libs/methods.so > | 7f1e472da000-7f1e472db000 r--p 00006000 08:03 3985139 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/methods/libs/methods.so > | 7f1e472db000-7f1e472dc000 rw-p 00007000 08:03 3985139 > | > /home/cedric/local/R/x86_64-pc-linux-gnu-4.5.3-gfortran-4.5.3/lib64/R/library/methods/libs/methods.so > | 7f1e472dc000-7f1e47370000 rw-p 00000000 00:00 0 > | 7f1e47370000-7f1e4737c000 r-xp 00000000 08:03 3560614 > | /lib64/libnss_files-2.14.1.so > | 7f1e4737c000-7f1e4757b000 ---p 0000c000 08:03 3560614 > | /lib64/libnss_files-2.14.1.so > | 7f1e4757b000-7f1e4757c000 r--p 0000b000 08:03 3560614 > | /lib64/libnss_files-2.14.1.so > | 7f1e4757c000-7f1e4757d000 rw-p 0000c000 08:03 3560614 > | /lib64/libnss_files-2.14.1.so > | 7f1e4757d000-7f1e47587000 r-xp 00000000 08:03 3560636 > | /lib64/libnss_nis-2.14.1.so > | 7f1e47587000-7f1e47787000 ---p 0000a000 08:03 3560636 > | /lib64/libnss_nis-2.14.1.so > | 7f1e47787000-7f1e47788000 r--p 0000a000 08:03 3560636 > | /lib64/libnss_nis-2.14.1.so > | 7f1e47788000-7f1e47789000 rw-p 0000b000 08:03 3560636 > | /lib64/libnss_nis-2.14.1.so > | 7f1e47789000-7f1e4779e000 r-xp 00000000 08:03 3560613 > | /lib64/libnsl-2.14.1.so > | 7f1e4779e000-7f1e4799d000 ---p 00015000 08:03 3560613 > | /lib64/libnsl-2.14.1.so > | 7f1e4799d000-7f1e4799e000 r--p 00014000 08:03 3560613 > | /lib64/libnsl-2.14.1.so > | 7f1e4799e000-7f1e4799f000 rw-p 00015000 08:03 3560613 > | /lib64/libnsl-2.14.1.so > | 7f1e4799f000-7f1e479a1000 rw-p 00000000 00:00 0 > | 7f1e479a1000-7f1e479a8000 r-xp 00000000 08:03 3560626 > | /lib64/libnss_compat-2.14.1.somake: *** [run] Aborted > | > | Anybody is observing the same problem? > > This does suggest a threading issue. Hm. > > > On 28 February 2012 at 16:13, GOUY-PAILLER Cedric wrote: > | I forgot to mention that the other Rinside examples work well (even the > | qt one). > > That is a helpful too. It seems to exclude R issues, as well as RInside > issues (and possibly even the MKL issue I brought up above). > > So it leaves Wt as the main difference. I am using the 3.1.10 packages > prepared by the Debian / Ubuntu maintainer for Wt, Pau Garcia i Quiles (his > email is [email protected]). He is pretty knowledgeable about Wt. He also > spotted / fixed a Javascript issue, and prepared new packages via his PPA on > launchpad (and I should add that issue only blocked rendering in the browser, > not the normal runs). > > If you built your own Wt, maybe you could compare build options between what > the Debian/Ubuntu systems have and what you have. I don't really have > another idea --- the example still builds and runs fine on the system I > developed it on. > > Regards, Dirk > > -- > "Outside of a dog, a book is a man's best friend. Inside of a dog, it is too > dark to read." -- Groucho Marx _______________________________________________ Rcpp-devel mailing list [email protected] https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
