Hi Evgueni

On Mon, Jul 20, 2009 at 7:05 PM, Evgueni Kolossov<ekolos...@gmail.com> wrote
>
> Another related question: is there any way to strip salts or I need to
> implement it myself?

There is a deleteSubstructs() function in ChemTransforms that does the
work, but it needs to be fed with a set of substructure definitions
for the salts. There isn't currently such a thing distributed with the
RDKit.

-greg

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